PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0058s0031.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 903aa    MW: 92865.1 Da    PI: 9.8989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0058s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05193215123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Mapoly0058s0031.1.p 193 FVCEICNKGFQRDQNLQLHRRGH 215
                          89******************988 PP

2zf-C2H211.80.00073269291123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +t+
  Mapoly0058s0031.1.p 269 WKCDKCSKRYAVQSDWKAHSKTC 291
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-5192215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.33E-7192215No hitNo description
SMARTSM003550.017193215IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949193215IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
SMARTSM00355220234264IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4257290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.33E-7264289No hitNo description
SMARTSM00355140269289IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MLPSLLLAPT DAPWFGNNSN NINSNWAAGL KGGDLRGCEV DGIGDTSNTL FVEAKSELLS  60
FGSAELSCSS LSDGTSSGKR AKRGALAQET GGGAVNSPHS NGVGLSAMTL SNLTSASGEA  120
SVSSGTRGDA STVPPSGGQT NNPATPATPT TTTNTTASGQ PGVKRKRNLP GTPDPDAEVI  180
ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSKEIR KRVYICPEPT  240
CVHHEPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC  300
GTLFSRRDSF ITHRAFCDAL AEESARVSAG KPGQGPGDHS MGAGPSAGGM SVMGAPQSPR  360
SQGVVRMGGG QMDPLSANTP PRPGMAGNFP GMGMGEGSLP IPAGRWGQPG PGAGPTTPGT  420
GTRLSLWSGP GPGPPGLMGG PQLQLGGNSQ MNPMDANSPF LMQPPKGMHG SGMSSMMGGS  480
DFDIPQAPRP SGGGMMQMPP PGPGSIFANL FASGNGLAGM QQSGPGQSGG NMQMGNMSGG  540
FSDFTGGAPT RLERGGSGAA GLTLSSSAGM TSSSSSANNN GAGTVPSVSS ILNQQQQQHT  600
STSQMSATAL LQKAAQMGAT ASNSSLLRGF GMGGGPGGQG GSGQGGQGGG TDNNNSIPIG  660
ALWQGPNRQD QGRAGSLPPI SSGMGGLSHP MLRRPGDPSP GSQGMGSSLP PPTFGGGQGR  720
SNEHQEFINS LTQFSGGMGN LPPMYPSSLG NSGNMGGMMP PTSPMQHRMQ GGNDNIGAQQ  780
QQQQQQQNQQ QQQQQQQQQQ HQQQQQQQQQ QQHTLHGGSQ PGGMPQSMMP GLPKTEDGGD  840
RFTRDFLGVG ATTTNMPGRA ISQRELAGIA PLGPGVDMSF NNQQRSVGPS GQPSPGKSWD  900
GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36265329367Zinc finger protein JACKDAW
5b3h_F1e-36265329367Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.10.0protein indeterminate-domain 1-like isoform X1
TrEMBLA0A176WC350.0A0A176WC35_MARPO; Uncharacterized protein
TrEMBLA0A2R6WTT40.0A0A2R6WTT4_MARPO; Uncharacterized protein
STRINGPP1S165_3V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-112C2H2 family protein