PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0050s0090.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 402aa    MW: 43309.4 Da    PI: 8.441
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0050s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.71.4e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG+s ++ +++a+p+++r+++++sl+yeA+ r+ +Pv Gavg+++++++
  Mapoly0050s0090.1.p   2 SCNGCRVLRKGCSESCILRPCLqwidtPDSQGHATVFVAKFFGRSGLMGFISAVPPSQRPNVFQSLLYEACGRTVNPVFGAVGLLWAGKW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l 
  Mapoly0050s0090.1.p  92 DVCQAAVETVLK 103
                          ******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7221107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPD SQGHATVFVA KFFGRSGLMG FISAVPPSQR  60
PNVFQSLLYE ACGRTVNPVF GAVGLLWAGK WDVCQAAVET VLKGGSLRPP SPTAMEVNSG  120
LCNGGMRSIP FPVVKPSQNL SCPSDTAGLA ASGEKPQCFN RVREEILEGM VNAQHSDRAR  180
QELMFAFETK AKAIDGEPPL VQQFGIDQGV HEGEFMKYAP GRFDFPSVRG LNMPSLKKGN  240
EGEKRETEER TTDGPQVVVP LARRVANRTK VLDLRPPCST SDAPVARVEN EEREKLELDL  300
TLSSVSAAKE EPKAWTSGFV PLGDHKVRLA SKTGIACKGM KRVLSPNSSE SVNSEGSVTS  360
LDSTCDLSLS RASTGFWKAH KCAPGPVSSS HSRKALTLFH T*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WXQ90.0A0A2R6WXQ9_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-65LOB domain-containing protein 37