PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0042s0072.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB_related
Protein Properties Length: 336aa    MW: 36535.1 Da    PI: 6.3885
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0042s0072.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08273320146
                          TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                          +g W+  Ed+ lv a k + ++   +W+++a+ ++ g+t  qc  r+  
  Mapoly0042s0072.1.p 273 KGLWSDREDKALVTALKTFSKDtvmRWDKVASAIP-GKTKAQCLKRFSE 320
                          678********************************.*******999865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.437158199IPR017877Myb-like domain
SMARTSM007175.4E-5162215IPR001005SANT/Myb domain
SuperFamilySSF466895.83E-6164202IPR009057Homeodomain-like
CDDcd001671.75E-4165199No hitNo description
PROSITE profilePS512939.685271326IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.6E-8272321IPR009057Homeodomain-like
SuperFamilySSF466891.15E-11272323IPR009057Homeodomain-like
SMARTSM007175.7E-8272324IPR001005SANT/Myb domain
PfamPF002492.5E-7273319IPR001005SANT/Myb domain
CDDcd001672.94E-7276318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDYDVIDDTR PRLQLKSGPA SSHSEERHVN KVQVGICCSI GVALLGFGWT LIAPLQFISM  60
WLGLSMIVGP LAPLSLTGGD CRVGEGEPIP PVEVSEELPE AANSRADFKY APRKGAFEVS  120
RDAKTVKDVE ETVGGNGPRP SGAPKGETAN TNNSRKGATE ADDKEFTHEE VEWLRKLLIK  180
HPRGTMKRWE VIAEAMGGKH SADNVVKMAK ALGERKFTDQ DSYTKFLSQR KGSDVAIASP  240
LSQRYEGENG TDLQDDNGAV GEITANEPDG SGKGLWSDRE DKALVTALKT FSKDTVMRWD  300
KVASAIPGKT KAQCLKRFSE LRRNFRSSKA DGEVE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X1S80.0A0A2R6X1S8_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-51MYB_related family protein