PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0039s0059.13.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 761aa    MW: 81822.4 Da    PI: 6.7589
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0039s0059.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.7e-16537583455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  Mapoly0039s0059.13.p 537 VHNLSERRRRDRINEKMKALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 583
                           6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-20531596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.495533582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.33E-14536578No hitNo description
Gene3DG3DSA:4.10.280.102.9E-19537592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13537583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-18539588IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MSHLVPDWDG NGGDLEAVLP TSDFSLPVKG KWDSLPHKRS HLSGLAFVPT HDAGETEWAE  60
ESHIVAMQNQ SGKGNKAMWQ QMNFQNGWSS VPESEDAVTP VKPISSSSPG KEPVLVNEPA  120
VDTHHSSALN MQEDEMVCWL QYPLDEHLER DYCSEFFGEL PNSNISNMQL MKDSFAGQNQ  180
VAGRNNRNPG PVNVGSNSRM SSADAAMAMG AGRAAGLLPQ TGVEVFTKVR TTLQPYGGKW  240
SPNQNNAGKT LGAMTSTLAP SPSRSPPMSG NLSTPMLPPK SQGLSFQPPR TSGPMNFSHF  300
SRPAAVMKAN LQCLGMSHVA PPHGSGTNVR LKSQPYSGKP PVDASTSTGS SIAESTTTRQ  360
RSGAFRKDTE CQVEGSEAQQ SLGTESSWPS MQNSLSGKDT DAVNSSVDGV DCDSKPGIAD  420
VDNCRNSSIT GSGGLGTEKH QSQGAEVQEA PEPTITSSSG GSGNSADRGK EAASSGKRRT  480
REGEESECQS EVSNLLQPQG SQVGAVAHRQ DGEDEMAQQK KPQQRGSTTK RSRAAEVHNL  540
SERRRRDRIN EKMKALQELI PNSNKTDKAS MLDEAIEYLK MLQLQLQQMM SMRSGMSIPS  600
MVMPAGMQHL QIPQLPQMGP MPPMGMGMGM GMGMGPMGMG MSMMDMGGGA PGRPMIPLPS  660
HSGPSHSHNV SATSPAVSMV DTHDHRLQNP SVMESLNVFM AQHRQMQMAP QPMSMDAFSA  720
FMIHQHQQQH QQQHQQHQLQ HQHQHSLHHL PSSMGGGAPQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1541546ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0932650.0LC093265.1 Marchantia polymorpha MpPIF gene for phytochrome interacting factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S84_22V6.11e-178(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-25phytochrome interacting factor 3