PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0033s0095.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 894aa    MW: 94404.7 Da    PI: 8.0657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0033s0095.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-0584106123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C +C++ F r  nL+ H r+H
  Mapoly0033s0095.1.p  84 YICDICSQGFQRDQNLQMHRRRH 106
                          89********************9 PP

2zf-C2H214.97.9e-05161183123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s++k H++t+
  Mapoly0033s0095.1.p 161 WKCEKCSKGYAVQSDYKAHLKTC 183
                          58*******************98 PP

3zf-C2H2120.00063189209323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C dCg++Fsr +++  H+ t+
  Mapoly0033s0095.1.p 189 CCDCGRVFSRVESFIEHQDTC 209
                          ******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.82E-583106No hitNo description
Gene3DG3DSA:3.30.160.602.2E-483106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01584106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74184106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM0035564125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4148182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.82E-5156181No hitNo description
SMARTSM0035568161181IPR015880Zinc finger, C2H2-like
SMARTSM00355130187207IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MDVEGSAFEN DMAADAGPAG AGSPSHITCS SSALSPSKSN PPMTHNDGPC NGSNKRKRRP  60
AGTPDPDAEV VALSPRTLLE SDRYICDICS QGFQRDQNLQ MHRRRHKVPW KLLKRQTTDT  120
RKRVYVCPEP TCLHHDPSHA LGDLVGIKKH YRRKHSTDKQ WKCEKCSKGY AVQSDYKAHL  180
KTCGTRGHCC DCGRVFSRVE SFIEHQDTCT AAKEKSALQI GGLVGGSQAN RGLADSPSSR  240
SLSTECLSVD PSRSALSDSA VMPSCSEYGD MPVNSSSPSG NQQHWMMLGD SRELQLLPEE  300
SGGSRGSTSM MVMSSTSGGR RVIPVIELKC NTPPTAQSAG GSGGGGGGGG GGGAETTPGL  360
QLSIGPYSNT EDASNLRDKA SISMIGPSLP DVYEVKPVTA TERAAFSSMQ QHRLQRRASE  420
GSNSEVNTAV AGLGALQSLT SASLRGGGGG GGSGSALGGG GLGSSVGHNG CGGIGDGLTL  480
SSSSPPTTAT SCARGGGGEC SDVAQMHHLL KGPAGARKNV SSNLLLAGVK ESSLLSRRRS  540
RSPNQYQQYD MHNGQSDLVV VPASTECMGG AWGQANRQQN APLTPTTPST TNGGTYVTDL  600
ESETAIMPMR NRQYGGGGGG GAAAREHMEA AVRAMEEASR HKDMASNARE MARPDVGSAW  660
WTDLAAARRT KEQARVEREE AESQLAQAEL LKQEAREQMK LASAEKTYAE HARENAKRQR  720
ELAESELNSA KRVREQAQSD FAKAQMLKEQ ADRFMDAASG RLSVAAVMSN QPSTDASSSA  780
QSEQQQQNNN NNNSGSSSSS KNNQRQVPPC LDFTSLPLPN FSSTSSPFQI STPPRYPSSM  840
IPVTFIGTSA ICPPPMSLPP SFDTVCTTAA SHSTYSSSMV TEGHLRTPKP EMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-19158217463Zinc finger protein JACKDAW
5b3h_F2e-19158217463Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X6H50.0A0A2R6X6H5_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-100indeterminate(ID)-domain 14