PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0029s0049.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NF-YC
Protein Properties Length: 219aa    MW: 25039.8 Da    PI: 6.4318
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0029s0049.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.41.2e-54541581102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql+ fw++q   +e+ ++fknh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr d
  Mapoly0029s0049.2.p  54 QLQLFWQQQiqeMEQINEFKNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGD 143
                          89*****999899***************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          ifdflvdivprdelk
  Mapoly0029s0049.2.p 144 IFDFLVDIVPRDELK 158
                          ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.56E-3339148IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.7E-3768140IPR009072Histone-fold
PfamPF008081.9E-2176139IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MASHPHHLQH PSSSPGMPHP QAVMQPPMHY PQGQPQLQGQ MQPQLHYQQI QKQQLQLFWQ  60
QQIQEMEQIN EFKNHQLPLA RIKKIMKSDE DVKMIAAEAP VLFAKACEMF ILELTLRSWI  120
HTEENKRRTL QRNDIAGAIT RGDIFDFLVD IVPRDELKEE DVPWSGVGVA GDPSVSYGGL  180
YYPPTLQQPL HHTMASPDMM VVQPSMPPNP QMMYQPPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-444815412119HapE
4g92_C1e-444815412119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132RRTLQRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023993.15e-67PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9SMP07e-66NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA9NUT03e-74A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S315_9V6.32e-94(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-56nuclear factor Y, subunit C4