PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0029s0049.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NF-YC
Protein Properties Length: 232aa    MW: 26379.3 Da    PI: 6.2765
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0029s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.21.4e-54671711102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql+ fw++q   +e+ ++fknh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr d
  Mapoly0029s0049.1.p  67 QLQLFWQQQiqeMEQINEFKNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGD 156
                          89*****999899***************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          ifdflvdivprdelk
  Mapoly0029s0049.1.p 157 IFDFLVDIVPRDELK 171
                          ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-3255161IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.6E-3781153IPR009072Histone-fold
PfamPF008082.2E-2189152IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MASHPHHLQH PSSSPGMPHP QAVMQPPMHY PQGQPQILMD GGYGMVSSQL QGQMQPQLHY  60
QQIQKQQLQL FWQQQIQEME QINEFKNHQL PLARIKKIMK SDEDVKMIAA EAPVLFAKAC  120
EMFILELTLR SWIHTEENKR RTLQRNDIAG AITRGDIFDF LVDIVPRDEL KEEDVPWSGV  180
GVAGDPSVSY GGLYYPPTLQ QPLHHTMASP DMMVVQPSMP PNPQMMYQPP Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5375167395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RRTLQRN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369382.17e-93nuclear transcription factor Y subunit C-2-like
SwissprotQ9SMP02e-64NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A2R6X8T81e-168A0A2R6X8T8_MARPO; Uncharacterized protein
STRINGPP1S315_9V6.33e-92(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-56nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]