PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0029s0049.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NF-YC
Protein Properties Length: 232aa    MW: 26379.3 Da    PI: 6.2765
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0029s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.21.4e-54671711102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql+ fw++q   +e+ ++fknh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr d
  Mapoly0029s0049.1.p  67 QLQLFWQQQiqeMEQINEFKNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGD 156
                          89*****999899***************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          ifdflvdivprdelk
  Mapoly0029s0049.1.p 157 IFDFLVDIVPRDELK 171
                          ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-3255161IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.6E-3781153IPR009072Histone-fold
PfamPF008082.2E-2189152IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MASHPHHLQH PSSSPGMPHP QAVMQPPMHY PQGQPQILMD GGYGMVSSQL QGQMQPQLHY  60
QQIQKQQLQL FWQQQIQEME QINEFKNHQL PLARIKKIMK SDEDVKMIAA EAPVLFAKAC  120
EMFILELTLR SWIHTEENKR RTLQRNDIAG AITRGDIFDF LVDIVPRDEL KEEDVPWSGV  180
GVAGDPSVSY GGLYYPPTLQ QPLHHTMASP DMMVVQPSMP PNPQMMYQPP Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C8e-45411672119HapE
4g92_C8e-45411672119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RRTLQRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023993.12e-66PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_002322264.22e-66hypothetical protein POPTR_0015s10940g
SwissprotQ9SMP02e-65NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA9NUT06e-74A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S315_9V6.31e-92(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-56nuclear factor Y, subunit C4