PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0009s0013.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family AP2
Protein Properties Length: 420aa    MW: 45524.1 Da    PI: 5.7614
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0009s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-16105156155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Mapoly0009s0013.1.p 105 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDMAAIEYRG 156
                          89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.418147IPR001471AP2/ERF domain
SMARTSM003806.2E-4153IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-91349IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-91548IPR001471AP2/ERF domain
PfamPF008477.0E-12105156IPR001471AP2/ERF domain
CDDcd000187.48E-16105166No hitNo description
SuperFamilySSF541711.11E-17105166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17106165IPR001471AP2/ERF domain
PROSITE profilePS5103218.413106164IPR001471AP2/ERF domain
SMARTSM003803.8E-24106170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MRLASSPLHR PVRPVYLGAY DEEEAAARAY DLAALKYWGP GTLINFPVST FETEAIRTSF  60
VICLVRCGKL VSDYARDIEE MQNVTREEYL ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE  120
ARIGRVFGNK YLYLGTYSTQ EEAAAAYDMA AIEYRGLNAV TNFDLSRYIR WLRPGQGNSA  180
LQEPESNLSP VPGDESQLLV DEQCQAAAAA AAAAAAAAGV GEEPHPPVWP AQSTEPYQLP  240
ALGLASNGSQ QQQQQQRSSS SPTALSLLLQ SSMFKQMLER ASSASGPTDC DSTTPSSDLG  300
MDPSGAPQQL QQQHPSSHFF STHQAPPLVE DDSSEHQDVS SYLFSNPTSS SNHHHHHHHL  360
SMYGDHLTPQ DHLSPYSSFP PGVSSSLPTD SEGVAASLDD GSAYWSFGGA LPLNPITSC*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XLC50.0A0A2R6XLC5_MARPO; Uncharacterized protein
STRINGGLYMA18G49101.11e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.27e-54ARIA-interacting double AP2 domain protein