PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0008s0016.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB_related
Protein Properties Length: 745aa    MW: 81190.9 Da    PI: 10.234
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0008s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08634682348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E + lv++v++ Ggg W+ I +        Rt+ ++k++w+++l
  Mapoly0008s0016.1.p 634 PWTLREVLTLVEGVARCGGGKWADIKKLAFstvSYRTAVDLKDKWRNLL 682
                          8**************************99999989************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.768627686IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-12628684IPR009057Homeodomain-like
SuperFamilySSF466893.66E-15629684IPR009057Homeodomain-like
SMARTSM007171.7E-7631684IPR001005SANT/Myb domain
CDDcd116602.35E-19633683No hitNo description
PfamPF002491.2E-6634682IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MLDSTLLESK GTPGQVAGKD GVPSLTAPKI LDEVFVDEVV LTTVKDRADE KFLPSTEDAN  60
IEMNSLSVAE ADPSQNFLND DEHMIHFDGD MDQESDTDDD SDEKDGSTAL LEDSDPTAQK  120
RNLLARLKVV EAMLQQVAKE EQLRTQREAS FTKAGTNNRV ISTSPVLAEN GVDHKRQRRP  180
NPKYFDAEID AEFQISGSSL LARASFGEGG TGVVNIPDSQ PLQNGENTTT AAVTSISPPD  240
YLNRIRPPMI QRARTALAQK HRVFSLSESS TVAVKTDSNL DNLSIRELHE AYRKAFGRDT  300
SVKDKHWLKR QIFMGLSKQN ATSNGKENNR SKSTLTDSNL KSRAEKISSA EAPLVTFSTV  360
GVNGKRKSKG TEAIFSPHEC KKAHRKTLSL SGLSPLNSPN PGITGDCSGG TNQEGTLSVV  420
QTSGSLVGEK RIRKPNRRYI EDEGDESLGL AANGSRSVLS TLPDAGNGLR SAPLRLSWKN  480
DAEVVEAESK INVIRNKSLR ASTRSTSSIR STSSNGRRSK HGNNGIQKKK IDSRAAKLVK  540
IAHSARAARL DIQKTIRKVK FRLPAAPGQE KGEVLNGGDG EQVSCLLPVR IDETIGDHEL  600
LNSQYQTRSE SNDEQAVVTV PTANGGTRRK HHRPWTLREV LTLVEGVARC GGGKWADIKK  660
LAFSTVSYRT AVDLKDKWRN LLRASRAQLH PPKQGETRKK QFSAAIPSQL LARVRELAAL  720
NNQAVSNVSA GSSTSRSGRV VHRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XMA90.0A0A2R6XMA9_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-30TRF-like 6