PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0005s0152.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NF-YC
Protein Properties Length: 286aa    MW: 31573.2 Da    PI: 6.0057
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0005s0152.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.71.1e-55781821102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie+++dfk h+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd
  Mapoly0005s0152.1.p  78 QLQMFWHSQmneIEQVSDFKTHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTD 167
                          89*****9977789**************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          ifdflvdivprdelk
  Mapoly0005s0152.1.p 168 IFDFLVDIVPRDELK 182
                          ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.26E-3455172IPR009072Histone-fold
PfamPF008081.6E-21100163IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37101178IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDMAQQPMNM MPGQQQMQYP QMAQNPQMQA QMQQPYPQGS PGVPSPPGPS GQPQGPYPGA  60
LAQQQVSFQH LQQQHQQQLQ MFWHSQMNEI EQVSDFKTHQ LPLARIKKIM KADEDVRMIS  120
AEAPVLFAKA CEMFILELTL RSWIHTEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRDE  180
LKDETALGGV PRAALPVGSP ADAIPYGGGM YYVATGQPQG GPPMQQGQPN MMGSPAMMVG  240
RPGMPMDPAM YGQQARPPTM QYMPPQSMQQ MWPQSGSSPG IPPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-45691789119HapE
4g92_C3e-45691789119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090782.11e-80PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X2
RefseqXP_011090781.12e-80PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_011090780.12e-80PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_011090779.12e-80PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_011090778.12e-80PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_011090777.12e-80PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
SwissprotQ9SMP03e-71NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A068TUH82e-78A0A068TUH8_COFCA; Uncharacterized protein
TrEMBLA0A0D2R1E64e-78A0A0D2R1E6_G
STRINGPP1S51_318V6.18e-81(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.19e-63nuclear factor Y, subunit C1