PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0298.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family TCP
Protein Properties Length: 1111aa    MW: 119341 Da    PI: 8.2272
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0298.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.25.1e-375887522128
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssa..sec.eaesssss 81 
                           g+kdrhsk+ T++g+RdRRvRls+++a +f+d+qd+LGfd++sk++eWL+ +ak ai+el +        +      s c ++ ++++s
  Mapoly0001s0298.3.p 588 SGGKDRHSKVNTAKGPRDRRVRLSVPTAVQFYDVQDRLGFDQPSKAVEWLIHKAKDAIDELGRIpvdgkdgP---RvpSVCtSDITRHVS 674
                          689************************************************************966665531...144556544444444 PP

                  TCP  82 asnsssg.................................kaaksaakskksqksaasalnlak.esrakarararertre 128
                           s+s  g                                 + ++ +a++ +s++sa   + la+ esr kar+rarert++
  Mapoly0001s0298.3.p 675 ISSSY-GagavsglgmfaplqpnqgnfagptfgvgrmdltRPNSGSAEGGRSNESAG--SPLARvESRTKARERARERTKK 752
                          44222.13556677788888888889999********98655555556666666666..899999**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-35589752IPR005333Transcription factor, TCP
PROSITE profilePS5136932.971590648IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.434736753IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 1111 aa     Download sequence    Send to blast
MLAWARSVDS STSCHARSTS WRIGFEGNCW PVERDLQDVC NRQCSDSTGY LEVSVRAAKQ  60
PQSELCFSVA NGSKFESKVD ERARDGERFR IERDQIRQYA QSIYRTLADP QAAAVPTEQR  120
SSGLRSSIPG GQLACDVSKY RVQTASANQL HPNSNDSFES INFSPSSPIT DHQRELRRTE  180
IEAGLEPEGT RRQNVGEEAS DQINRATSLK NGFPLAERAS APEKFIAEGL DDSEPARHGR  240
GGPQNKRSSI WAKNVELVGH GPFAFRENIV ECSTHIGVSE KEGFVLHNVI DAQASHGRAK  300
EPTADSGTPR SQNSHQRTIH PQGRQDRAKT ANAIPSSPQS QALTDRVSRG AASDALGTDL  360
LPQSIGSDLL QQGTTPARVE RVQNISRTRS GGERDVEDTL KGRRYPERIG DLRATTVATA  420
GRQHKAERSG EIPPVRTSQE TVVGTAGVLT IPERIGGTAE DLTAREIVDV SESHSVSERV  480
GGRAETHSAQ DGGSAEGFTI RERTGGSPSE GNKIPERIGA VSDRDSAGKV QEKGKEEKLH  540
PREEGHQRQS ESSDERRLRA RIDGSGGSAS GGGDEIEEPK VVRPARPSGG KDRHSKVNTA  600
KGPRDRRVRL SVPTAVQFYD VQDRLGFDQP SKAVEWLIHK AKDAIDELGR IPVDGKDGPR  660
VPSVCTSDIT RHVSISSSYG AGAVSGLGMF APLQPNQGNF AGPTFGVGRM DLTRPNSGSA  720
EGGRSNESAG SPLARVESRT KARERARERT KKGPGRDGNQ GKVTSGGSPS SSQSPPFHPN  780
PAFNSFNASN SIQSSGHGLS LQSPHQSALL PAAYDGSPFS RIMQGSHQAT FQNMIMHNPP  840
LDCQFGDQTQ SPLHNAFLVQ PQASLPSPSH TMNTLQHPHL QTMQVNAQGA LHLGTNFNPG  900
PCSSSFAEAS MSSPHYPPVP TLPISQSLSI PQLSSLGMSP ASSLGPHYPT GSPTPIPPGF  960
SPGPPASAFR AHSLSISQCS NPNQNHQQQQ QQLQGLSRVQ RPVPSFSTTP STSHAGSSSS  1020
RAHAHPYYSG NSSTALMGCL QSMPSFAPRS NVGYEHGQRV RPMMSPNRIH SYQASNSQIP  1080
ARIHGLDDME ELEEEPNPAT PSSPHLSPHP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-20595648154Putative transcription factor PCF6
5zkt_B7e-20595648154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XW140.0A0A2R6XW14_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-30TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2