PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0298.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family TCP
Protein Properties Length: 1114aa    MW: 119823 Da    PI: 8.4938
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0298.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.25.2e-375917552128
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssa..sec.eaesssss 81 
                           g+kdrhsk+ T++g+RdRRvRls+++a +f+d+qd+LGfd++sk++eWL+ +ak ai+el +        +      s c ++ ++++s
  Mapoly0001s0298.2.p 591 SGGKDRHSKVNTAKGPRDRRVRLSVPTAVQFYDVQDRLGFDQPSKAVEWLIHKAKDAIDELGRIpvdgkdgP---RvpSVCtSDITRHVS 677
                          689************************************************************966665531...144556544444444 PP

                  TCP  82 asnsssg.................................kaaksaakskksqksaasalnlak.esrakarararertre 128
                           s+s  g                                 + ++ +a++ +s++sa   + la+ esr kar+rarert++
  Mapoly0001s0298.2.p 678 ISSSY-GagavsglgmfaplqpnqgnfagptfgvgrmdltRPNSGSAEGGRSNESAG--SPLARvESRTKARERARERTKK 755
                          44222.13556677788888888889999********98655555556666666666..899999**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-35592755IPR005333Transcription factor, TCP
PROSITE profilePS5136932.971593651IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.434739756IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MILSRLREGV QNSGWTSRLR STSWRIGFEG NCWPVERDLQ DVCNRQCSDS TGYLEVSVRA  60
AKQPQSELCF SVANGSKFES KVDERARDGE RFRIERDQIR QYAQSIYRTL ADPQAAAVPT  120
EQRSSGLRSS IPGGQLACDV SKYRVQTASA NQLHPNSNDS FESINFSPSS PITDHQRELR  180
RTEIEAGLEP EGTRRQNVGE EASDQINRAT SLKNGFPLAE RASAPEKFIA EGLDDSEPAR  240
HGRGGPQNKR SSIWAKNVEL VGHGPFAFRE NIVECSTHIG VSEKEGFVLH NVIDAQASHG  300
RAKEPTADSG TPRSQNSHQR TIHPQGRQDR AKTANAIPSS PQSQALTDRV SRGAASDALG  360
TDLLPQSIGS DLLQQGTTPA RVERVQNISR TRSGGERDVE DTLKGRRYPE RIGDLRATTV  420
ATAGRQHKAE RSGEIPPVRT SQETVVGTAG VLTIPERIGG TAEDLTAREI VDVSESHSVS  480
ERVGGRAETH SAQDGGSAEG FTIRERTGGS PSEGNKIPER IGAVSDRDSA GKVQEKGKEE  540
KLHPREEGHQ RQSESSDERR LRARIDGSGG SASGGGDEIE EPKVVRPARP SGGKDRHSKV  600
NTAKGPRDRR VRLSVPTAVQ FYDVQDRLGF DQPSKAVEWL IHKAKDAIDE LGRIPVDGKD  660
GPRVPSVCTS DITRHVSISS SYGAGAVSGL GMFAPLQPNQ GNFAGPTFGV GRMDLTRPNS  720
GSAEGGRSNE SAGSPLARVE SRTKARERAR ERTKKGPGRD GNQGKVTSGG SPSSSQSPPF  780
HPNPAFNSFN ASNSIQSSGH GLSLQSPHQS ALLPAAYDGS PFSRIMQGSH QATFQNMIMH  840
NPPLDCQFGD QTQSPLHNAF LVQPQASLPS PSHTMNTLQH PHLQTMQVNA QGALHLGTNF  900
NPGPCSSSFA EASMSSPHYP PVPTLPISQS LSIPQLSSLG MSPASSLGPH YPTGSPTPIP  960
PGFSPGPPAS AFRAHSLSIS QCSNPNQNHQ QQQQQLQGLS RVQRPVPSFS TTPSTSHAGS  1020
SSSRAHAHPY YSGNSSTALM GCLQSMPSFA PRSNVGYEHG QRVRPMMSPN RIHSYQASNS  1080
QIPARIHGLD DMEELEEEPN PATPSSPHLS PHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-20598651154Putative transcription factor PCF6
5zkt_B9e-20598651154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XW060.0A0A2R6XW06_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-30TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2