PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0298.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family TCP
Protein Properties Length: 1149aa    MW: 123362 Da    PI: 8.3328
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0298.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.51.7e-365917902128
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                           g+kdrhsk+ T++g+RdRRvRls+++a +f+d+qd+LGfd++sk++eWL+ +ak ai+el +                           
  Mapoly0001s0298.1.p 591 SGGKDRHSKVNTAKGPRDRRVRLSVPTAVQFYDVQDRLGFDQPSKAVEWLIHKAKDAIDELGRIpvdgkdgprvpsvctsditrhvsiss 680
                          689************************************************************999999998888888888888776666 PP

                  TCP  66 ...............ssssaseceaesssssasnsssg.................................................kaa 91 
                                         s      c+++s          +                                                 + +
  Mapoly0001s0298.1.p 681 sygagavsglvsgtsS------CSPAS----------SfqgpssmsygdqlsflmnpsiaqgmfaplqpnqgnfagptfgvgrmdltRPN 754
                          6666555555444331......32222..........022222233345555666777778999999999999***********986555 PP

                  TCP  92 ksaakskksqksaasalnlak.esrakarararertre 128
                          + +a++ +s++sa   + la+ esr kar+rarert++
  Mapoly0001s0298.1.p 755 SGSAEGGRSNESAG--SPLARvESRTKARERARERTKK 790
                          55556666666666..899999**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.8E-34592790IPR005333Transcription factor, TCP
PROSITE profilePS5136932.971593651IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.434774791IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 1149 aa     Download sequence    Send to blast
MILSRLREGV QNSGWTSRLR STSWRIGFEG NCWPVERDLQ DVCNRQCSDS TGYLEVSVRA  60
AKQPQSELCF SVANGSKFES KVDERARDGE RFRIERDQIR QYAQSIYRTL ADPQAAAVPT  120
EQRSSGLRSS IPGGQLACDV SKYRVQTASA NQLHPNSNDS FESINFSPSS PITDHQRELR  180
RTEIEAGLEP EGTRRQNVGE EASDQINRAT SLKNGFPLAE RASAPEKFIA EGLDDSEPAR  240
HGRGGPQNKR SSIWAKNVEL VGHGPFAFRE NIVECSTHIG VSEKEGFVLH NVIDAQASHG  300
RAKEPTADSG TPRSQNSHQR TIHPQGRQDR AKTANAIPSS PQSQALTDRV SRGAASDALG  360
TDLLPQSIGS DLLQQGTTPA RVERVQNISR TRSGGERDVE DTLKGRRYPE RIGDLRATTV  420
ATAGRQHKAE RSGEIPPVRT SQETVVGTAG VLTIPERIGG TAEDLTAREI VDVSESHSVS  480
ERVGGRAETH SAQDGGSAEG FTIRERTGGS PSEGNKIPER IGAVSDRDSA GKVQEKGKEE  540
KLHPREEGHQ RQSESSDERR LRARIDGSGG SASGGGDEIE EPKVVRPARP SGGKDRHSKV  600
NTAKGPRDRR VRLSVPTAVQ FYDVQDRLGF DQPSKAVEWL IHKAKDAIDE LGRIPVDGKD  660
GPRVPSVCTS DITRHVSISS SYGAGAVSGL VSGTSSCSPA SSFQGPSSMS YGDQLSFLMN  720
PSIAQGMFAP LQPNQGNFAG PTFGVGRMDL TRPNSGSAEG GRSNESAGSP LARVESRTKA  780
RERARERTKK GPGRDGNQGK VTSGGSPSSS QSPPFHPNPA FNSFNASNSI QSSGHGLSLQ  840
SPHQSALLPA AYDGSPFSRI MQGSHQATFQ NMIMHNPPLD CQFGDQTQSP LHNAFLVQPQ  900
ASLPSPSHTM NTLQHPHLQT MQVNAQGALH LGTNFNPGPC SSSFAEASMS SPHYPPVPTL  960
PISQSLSIPQ LSSLGMSPAS SLGPHYPTGS PTPIPPGFSP GPPASAFRAH SLSISQCSNP  1020
NQNHQQQQQQ LQGLSRVQRP VPSFSTTPST SHAGSSSSRA HAHPYYSGNS STALMGCLQS  1080
MPSFAPRSNV GYEHGQRVRP MMSPNRIHSY QASNSQIPAR IHGLDDMEEL EEEPNPATPS  1140
SPHLSPHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-20598651154Putative transcription factor PCF6
5zkt_B8e-20598651154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XW120.0A0A2R6XW12_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.27e-30TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2