PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113448.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 562aa    MW: 61538 Da    PI: 5.82
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113448.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.35.8e-16378429155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_010113448.1 378 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 429
                     57****************988532...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-13236345No hitNo description
SMARTSM003801.1E-18237349IPR001471AP2/ERF domain
PROSITE profilePS5103215.158237343IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-10237259IPR001471AP2/ERF domain
PRINTSPR003676.8E-6238249IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-10309344IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-8313345IPR016177DNA-binding domain
PRINTSPR003676.8E-6325345IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-18378439IPR016177DNA-binding domain
CDDcd000185.15E-12378439No hitNo description
PfamPF008473.0E-10378429IPR001471AP2/ERF domain
SMARTSM003802.7E-31379443IPR001471AP2/ERF domain
PROSITE profilePS5103219.164379437IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-19379438IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAPATNCNWL SFSLSPLEML RSSESTQFMA AAYENSASTA TPQYLIDNFY ANGWANPKSQ  60
VFLTEEDNQG KESQPLSNIA DDSPILTSFI DPQSQSQAVP KLEDFLGDSS SMVRYSDSQT  120
ETQDSSLTQI YDASYFADQQ QDLKVKAVTG FQAFSTNSGS EVDDSASIPR TQLACAEFAG  180
HSIESSAGNE LAFSSCPTGS LSLGVTTQSL STEKTFVPVD SDCSKKVADT FGQRTSIYRG  240
VTRHRWTGRY EAHLWDNSCR REGQARKGRQ GFDATHTPKP QMFADINGLL SNASDFLSLP  300
LTFAFAFIRQ RKSGGYDKEE KAARAYDLAA LKYWGANATT NFPVSNYSKE LEEMKHVTKQ  360
EFIASLRRKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY  420
DIAAIKFRGA NAVTNFEMSR YDVEAIAKSA LPVGGAAKRL KLSLDSEDQK PSLTQDQQTQ  480
YGNSIVTTTA NNINFSTIQP ASAVPCGIPF DAALYHHNLF QHFQPNYIGG ADAAGSSPAV  540
AAPVTALISQ PAEFFVWPHQ SY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010113448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032930.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLW9T1160.0W9T116_9ROSA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_010113448.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.30.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]