PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113073.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YC
Protein Properties Length: 259aa    MW: 29028 Da    PI: 6.1485
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113073.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.51.3e-55771801101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   iek++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_010113073.1  77 QLQTFWANQyqeIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 171
                     89******99999********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  XP_010113073.1 172 VDIVPREDL 180
                     ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.01E-3366171IPR009072Histone-fold
PfamPF008081.6E-2199162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37100177IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDHPGHNQPP PMMMVGGGGQ LPYGANPYQS NQMPGNPTPG SVGSMQSVSQ AAGAQLAQHQ  60
LAYQHIQQQQ QQQLQQQLQT FWANQYQEIE KVNDFKNHSL PLARIKKIMK ADEDVRMISA  120
EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL  180
KDEVVASIPR GTLPVGGPAD TLPYCYMPPQ HAPQVGASGM MMGKPMMDPP MYVQQAPNPY  240
MAQQMWQQPS DQQQSSSDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-42631774119HapE
4g92_C3e-42631774119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086741.10.0Nuclear transcription factor Y subunit C-3
RefseqXP_010113073.10.0Nuclear transcription factor Y subunit C-9
SwissprotQ8L4B21e-88NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLW9QWK70.0W9QWK7_9R
TrEMBLW9T3160.0W9T316_9R
STRINGGLYMA19G42460.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-77nuclear factor Y, subunit C9