PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 647aa    MW: 70935.7 Da    PI: 7.2499
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112330.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.98.9e-17172221155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010112330.1 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 221
                     78*******************......55************************997 PP

2AP240.66.1e-13264314155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_010112330.1 264 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 314
                     89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2602.2E-4106186IPR008979Galactose-binding domain-like
SuperFamilySSF819954.18E-5138160No hitNo description
PfamPF008478.1E-9172221IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16172230IPR016177DNA-binding domain
SMARTSM003803.3E-32173235IPR001471AP2/ERF domain
PROSITE profilePS5103217.794173229IPR001471AP2/ERF domain
CDDcd000182.65E-11173231No hitNo description
Gene3DG3DSA:3.30.730.105.2E-17187230IPR001471AP2/ERF domain
PfamPF008471.9E-8264314IPR001471AP2/ERF domain
CDDcd000181.59E-25264324No hitNo description
SuperFamilySSF541711.18E-16264323IPR016177DNA-binding domain
SMARTSM003802.5E-32265328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-15265322IPR001471AP2/ERF domain
PROSITE profilePS5103215.527265322IPR001471AP2/ERF domain
PRINTSPR003678.7E-6266277IPR001471AP2/ERF domain
PRINTSPR003678.7E-6304324IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MLDLNLNVLS ADSAYQNDGD SAMFVEKVPQ GSGTQMDESG TSNSSIVNAD ASSNGGDDDS  60
CSTRAGGSEV YTFNFDILKV GAENDVVVTK EFFPMTTGGA NVDLKDWQGQ SSSSSAPSRK  120
KWIELGFDQS GSGEVRMPQQ QQQQQQQQQQ QQQQQQQQQP KKSRRGPRSR SSQYRGVTFY  180
RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDLNQM  240
KNLTKEEFVH ILRRHSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE  300
AARAYDKAAI KCNGREAVTN FEPSTYEGDM IPEANSEGGN HNLDLNLGIS PPSFGNGQKE  360
NEGRIQFRPG PYDVHGRKFV GMENHTSATL GDPPFKGLVM TSEQPLLLNG VYPSYFPSEE  420
RATEKRIALG SSQGLPSWKM HGQVTATQVP LFSTAASSGF SFSAAPPSAA ILPSKPLNPA  480
TLNLCFTSSA TAPTNSPQYY YQFSLFFPSH EPPHNSLLIA QSSRPPSCPL SPVLSRRTDK  540
DAASLPPQET HLRPYHRHPS PGLPPEAVAT PLPLHLNTLT AAITPLDFAS YASFASLFTF  600
TSSLPSDTWP SYASFIEPLR HLKMVGRNSP PTANCGSRDS LSGLATN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031787.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-119RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLW9SIG30.0W9SIG3_9ROSA; Ethylene-responsive transcription factor
STRINGXP_010112330.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-116related to AP2.7