PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 418aa    MW: 46511.7 Da    PI: 4.5989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112022.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C +sFs+   L  H+r+H
  XP_010112022.1  4 HKCKLCFRSFSNGRALGGHMRSH 26
                    79********************9 PP

2zf-C2H212.80.00036256278123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  XP_010112022.1 256 YKCETCSKVFRSYQALGGHRASH 278
                     9***********99999998887 PP

3zf-C2H211.20.0012309331123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++Fs+   L  H r+H
  XP_010112022.1 309 HECPVCFRVFSSGQALGGHKRSH 331
                     79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.37E-5329No hitNo description
SMARTSM003550.065426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658431IPR007087Zinc finger, C2H2
PfamPF139123.8E-6427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.024256278IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471256283IPR007087Zinc finger, C2H2
SuperFamilySSF576677.91E-8256331No hitNo description
PfamPF139122.0E-11256280IPR007087Zinc finger, C2H2
PROSITE patternPS000280258278IPR007087Zinc finger, C2H2
SMARTSM003550.19309331IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245309336IPR007087Zinc finger, C2H2
PfamPF139125.6E-11309331IPR007087Zinc finger, C2H2
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEKHKCKLCF RSFSNGRALG GHMRSHMMSL PIPPKLEEED PPPPPPPETS PAPAELSEEA  60
DSASSSSSEE AGEREEEEGE DEKELYYGLR ENPKRSIKLV DPEFSFAVVD AGSVVLQDRE  120
SETESSKNPT RRRSKRTRKS ASNSSDHHHQ YWQFDKTQLS VQDSSFPNTN KKIKSSELSE  180
PVSSVSDATT DEDIAFCLMM LSRDNWNREN EELEEAEAKG EEEDHAEEED EDESENESEE  240
ELKSSRNTNT RTRGKYKCET CSKVFRSYQA LGGHRASHKK IKISSSPALE EIHESLRENA  300
GSVITKKIHE CPVCFRVFSS GQALGGHKRS HVLSATITTT ISAPSPPKPT SAKNPSFTTT  360
TTTTKKSLNK LGDQISLIDL NLPAPDDDDD GDDGDDEDEI SQIEFSAVSD AEFVNPIR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112022.10.0zinc finger protein ZAT9
TrEMBLW9SHJ90.0W9SHJ9_9ROSA; Zinc finger protein ZAT9
STRINGXP_010112022.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-36C2H2-like zinc finger protein