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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010112022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 418aa MW: 46511.7 Da PI: 4.5989 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00091 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H XP_010112022.1 4 HKCKLCFRSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00036 | 256 | 278 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H XP_010112022.1 256 YKCETCSKVFRSYQALGGHRASH 278 9***********99999998887 PP | |||||||
3 | zf-C2H2 | 11.2 | 0.0012 | 309 | 331 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H XP_010112022.1 309 HECPVCFRVFSSGQALGGHKRSH 331 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.37E-5 | 3 | 29 | No hit | No description |
SMART | SM00355 | 0.065 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.658 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.8E-6 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.024 | 256 | 278 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 256 | 283 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.91E-8 | 256 | 331 | No hit | No description |
Pfam | PF13912 | 2.0E-11 | 256 | 280 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 258 | 278 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 309 | 331 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.245 | 309 | 336 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.6E-11 | 309 | 331 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 311 | 331 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MEKHKCKLCF RSFSNGRALG GHMRSHMMSL PIPPKLEEED PPPPPPPETS PAPAELSEEA 60 DSASSSSSEE AGEREEEEGE DEKELYYGLR ENPKRSIKLV DPEFSFAVVD AGSVVLQDRE 120 SETESSKNPT RRRSKRTRKS ASNSSDHHHQ YWQFDKTQLS VQDSSFPNTN KKIKSSELSE 180 PVSSVSDATT DEDIAFCLMM LSRDNWNREN EELEEAEAKG EEEDHAEEED EDESENESEE 240 ELKSSRNTNT RTRGKYKCET CSKVFRSYQA LGGHRASHKK IKISSSPALE EIHESLRENA 300 GSVITKKIHE CPVCFRVFSS GQALGGHKRS HVLSATITTT ISAPSPPKPT SAKNPSFTTT 360 TTTTKKSLNK LGDQISLIDL NLPAPDDDDD GDDGDDEDEI SQIEFSAVSD AEFVNPIR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010112022.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010112022.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | W9SHJ9 | 0.0 | W9SHJ9_9ROSA; Zinc finger protein ZAT9 | ||||
STRING | XP_010112022.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-36 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21385227 |