PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111888.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 221aa    MW: 24707 Da    PI: 8.8035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111888.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-053961123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_010111888.1 39 YSCNFCKRQFKSAQALGGHMNVH 61
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.78E-73766No hitNo description
Gene3DG3DSA:3.30.160.608.9E-53765IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.2E-63963IPR007087Zinc finger, C2H2
SMARTSM003550.00523961IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6143966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MERPNLSAIG KIIKEKWNCT DFMMSASNPC EIPWAVKNYS CNFCKRQFKS AQALGGHMNV  60
HRRERARLRL FSPLSTVAES CYNPSPNKFS SLSSSPSLSS SSATLSAKFL PQHYASHSML  120
SPPTASLSLP DHPLASTEKD RKTIFDFPRS CSSAVPLRDT TTKSMKAPVF EDGDLEGRFS  180
QKADYFKAFK TENVNITFDL ETGLLKDQNE GVDLELRLGY F
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111888.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111888.11e-164transcriptional regulator SUPERMAN
TrEMBLW9SXL41e-163W9SXL4_9ROSA; Transcriptional regulator SUPERMAN
STRINGXP_010111888.11e-164(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-19C2H2 family protein