PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 319aa    MW: 34528.9 Da    PI: 6.6531
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109936.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074135157123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_010109936.1 135 YECKTCNRTFPSFQALGGHRASH 157
                     99**********99999998887 PP

2zf-C2H213.20.00028213235123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_010109936.1 213 HECSICGSEFTSGQALGGHMRRH 235
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.4E-13134159IPR007087Zinc finger, C2H2
SMARTSM003550.052135157IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.84E-8135157No hitNo description
PROSITE profilePS5015710.658135162IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-8208235No hitNo description
PfamPF139129.7E-12212237IPR007087Zinc finger, C2H2
SMARTSM003550.019213235IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847213240IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEASHEEFVG SSNDNTNNNQ THHMIAKGRR TKRQRPSSPL ISSSSSSACG GEGGRGEEYG  60
NSFSSPPTTS SGGGGGGEVY ESTEEEEDMA NCLILLAQGN HRQYHRTHQQ EAAEDHKVIA  120
NNTTSSTNKA GLYAYECKTC NRTFPSFQAL GGHRASHKKP KTAAAVDDKK PTILSEELED  180
NQDDKEEHHV FLLNKTLQKV GIISTSTITN KVHECSICGS EFTSGQALGG HMRRHRAAVT  240
VPPNSNVVVS TTASVSASAA MTTNNSLSLH DEVEIIKRRR PNILQLDLNL PAPEDDHRSG  300
TESKFALVFS APALVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109936.10.0zinc finger protein ZAT5
TrEMBLW9SSQ80.0W9SSQ8_9ROSA; Zinc finger protein ZAT5
STRINGXP_010109936.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-50C2H2 family protein