PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109345.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TCP
Protein Properties Length: 536aa    MW: 59854.7 Da    PI: 7.3315
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109345.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.55.1e-341773333133
             TCP   3 gkkdrhskihT.kvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssss 81 
                     ++kdrhskihT    +R RR+Rls+++a++fFdLq+ LGf ++skt+eWLl++a  +ik+l ++               +s+++++ce +     
  XP_010109345.1 177 KRKDRHSKIHTgTTRPRHRRMRLSIDVAREFFDLQELLGFERASKTVEWLLRKARSEIKKLKDSnneggcsstcpemqtPSPNSESCEGA----- 266
                     79*********4468*************************************************88777766666554433333344222..... PP

             TCP  82 asnsssg....................kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                           +                    k   +   k ++s+++  + +  ake r+ka++rarertrekm+++
  XP_010109345.1 267 ------SgldevgingedqgvagtsssKPLVKGRtKYSRSNSKRVAINPRAKELREKAKERARERTREKMSKR 333
                     ......02223333344455666655533334333666666666667777789*****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-33177332IPR005333Transcription factor, TCP
PROSITE profilePS5136927.706178237IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.544312329IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MFNLPSNSWN VNNNDPINSF SHDQYYSHNF QKPFPNQQDQ YNYTLNSKQE VSHHLDHPKC  60
HSCTDQPLSF PNAYTSPFED QNLLPQNSHG INVSQQFYYS QPSFVKESAE KTSDVLLPSE  120
TFTPTITGSK LVKSDSDRSG EDLSESVAPT DQYDQPQILR KRSGGGCGDS GNNKSKKRKD  180
RHSKIHTGTT RPRHRRMRLS IDVAREFFDL QELLGFERAS KTVEWLLRKA RSEIKKLKDS  240
NNEGGCSSTC PEMQTPSPNS ESCEGASGLD EVGINGEDQG VAGTSSSKPL VKGRTKYSRS  300
NSKRVAINPR AKELREKAKE RARERTREKM SKRVERVEPA VQNHHGSGGG VGGGGSSTKI  360
ANHNKDHDDH GFKINQPASN KSEEKQQTGD QLPNQNMMDI DMNNNIVTPN SSLGAVMQVS  420
RYDQRYEFSQ EILPISNPNG WNIVQVSNHD HILETSTTST SITAPIVDYE TYSYLVNHLE  480
KWNNSLVANS VSNVGTTSGA TGFGVPQLHQ FNLSNFQVFG NELEGFNATP KIYADY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159178RKRSGGGCGDSGNNKSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109345.10.0transcription factor TB1
TrEMBLW9SA930.0W9SA93_9ROSA; Uncharacterized protein
STRINGXP_010109345.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-20TCP family protein