PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108895.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 362aa    MW: 40952.3 Da    PI: 9.6622
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108895.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.8e-18951143
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    ++i n+  r++tf kR++gilKKA+E S+LC++++++ i +++
  XP_010108895.1  9 EFIRNEKVRKTTFLKRKKGILKKANEFSILCGIDICLFISGPK 51
                    689***********************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-18172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.74147IPR002100Transcription factor, MADS-box
CDDcd001209.17E-20251No hitNo description
SuperFamilySSF554553.4E-182105IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-151050IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRGKLKLEF IRNEKVRKTT FLKRKKGILK KANEFSILCG IDICLFISGP KLDGDIGNNN  60
SRPSPEFETW PPERTKVMSI INKYQATILR KPPKKVHGLK DTFVERKRKI EAEISRCRKK  120
LCEAKYPTCL ELIEHLPVDE MSELVHRLDG KTEAIQFVIE AKKENELNKK TNEALSLMNS  180
NHYIDNNQVQ LLLNEIPRQP GYSNCPMNIS HPNMSNDMKY STTVFKDPMA GIHFNNPTAE  240
IQHMEAYMGY PHNYMQYSSS AKSALRGPVF GDPTAGMLME NMNVERMMTM FGNGGGSFGG  300
GESSSVQMPA AQYYPLLQVQ PPTTPYMQYP MNVLNLARRI GPMSQVMRSS STGGRSQVLS  360
EL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9SQ480.0W9SQ48_9ROSA; MADS-box transcription factor PHERES 1
STRINGXP_010108895.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-17M-type_MADS family protein