PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 297aa    MW: 33270.6 Da    PI: 6.6292
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108056.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.7e-082462792154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_010108056.1 246 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 279
                     469*****************************87 PP

2ELK25.53.1e-09200221122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_010108056.1 200 ELKIELKQGFKSRIEDVREEIL 221
                     9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-163175IPR005540KNOX1
PfamPF037907.2E-153374IPR005540KNOX1
SMARTSM012568.3E-2389144IPR005541KNOX2
PfamPF037915.6E-1792142IPR005541KNOX2
PROSITE profilePS512139.132200220IPR005539ELK domain
PROSITE profilePS5007111.677220283IPR001356Homeobox domain
SMARTSM003891.4E-10222287IPR001356Homeobox domain
SuperFamilySSF466893.94E-16222287IPR009057Homeodomain-like
CDDcd000863.80E-11223284No hitNo description
Gene3DG3DSA:1.10.10.606.9E-25227285IPR009057Homeodomain-like
PfamPF059201.0E-17240279IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQEAGGLGMM GSGGAGGELS VSGGGGDGGD RQLKAEIATH PMCEQLIAAH VSCLRVATPI  60
DQLPLIDMQL SQSHHLLRSY ASLQHQHGHS LSPHDRQELD NFLAQYLIVL CTFKEQLQQH  120
VRIHAVEAVM ACREIENTLQ ALAGVSLGEG TGATMSDDED DLQMDFSFDQ SGADGHDMMG  180
FGPLLPTESE RSLMERVRHE LKIELKQGFK SRIEDVREEI LRKRRAGKLP GDTTTVLKNW  240
WQQHSKWPYP TEDDKAKLVE ETGLQLKQIN NWFINQRKRN WHSNSQSVTS LKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12223279864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276296RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108056.10.0homeobox protein HD1
SwissprotQ9FPQ81e-168KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLW9RYL60.0W9RYL6_9ROSA; Homeobox protein knotted-1-like 7
STRINGXP_010108056.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-167KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]