PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108052.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TCP
Protein Properties Length: 407aa    MW: 42716 Da    PI: 9.1309
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108052.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1142.1e-351112142101
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg... 88 
                     a ++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++          +  + ++  +   
  XP_010108052.1 111 AIRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggaL----KIPTTTNA-Npvd 200
                     6899************************************************************77777444322210....11111111.1233 PP

             TCP  89 ..kaaksaa.kskksq 101
                          +s+a + kk++
  XP_010108052.1 201 etT--TSSAaTAKKRK 214
                     221..11111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-28116193IPR005333Transcription factor, TCP
PROSITE profilePS5136926.003117171IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTSHPQEMDL EDDGGSSDLS TSAGEPEKNT NPNPNPEHNN KNNRNNVNGV SRSANFAEMT  60
AFQALPMKEE PLDSDPDQKV QHQQSTSVVP VAMQMQVAPM PLPMPMPVST AIRRSSTKDR  120
HTKVEGRGRR IRIPATCAAR IFQLTRELGH KSDGETVRWL LEHAEQAIIE ATGTGTVPAI  180
AVSVGGALKI PTTTNANPVD ETTTSSAATA KKRKRPSNSE FVDLTDAVSQ SSGLAPIGPA  240
VPQGLVPVWA VAGNAAGVNM MVPANAFWMI PPTAAAAGPG PSRQQPQIWA LSPTVTPVFN  300
MAARPISSFV ANQPAVVGPA GVPSSVVEVP SHVAHHGGGL STSTTSVGPT AAKKTSSTMA  360
PSLSSSGGRG GGTKAQMLRD FSLEIYEKQE LQFMGRPGNH QTQSSKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108052.10.0transcription factor TCP9
SwissprotO646471e-71TCP9_ARATH; Transcription factor TCP9
TrEMBLW9SMV80.0W9SMV8_9ROSA; Uncharacterized protein
STRINGXP_010108052.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-56TCP family protein