PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107987.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 593aa    MW: 65532.4 Da    PI: 6.7524
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107987.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.5e-12278334155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aaka++ a++k++g
  XP_010107987.1 278 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 334
                     78*******************433.44555535555.779999**************98 PP

2AP246.49.9e-15379428355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010107987.1 379 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 428
                     9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-14278344IPR016177DNA-binding domain
CDDcd000186.59E-18278344No hitNo description
PfamPF008476.4E-9278334IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-12279343IPR001471AP2/ERF domain
SMARTSM003802.1E-22279348IPR001471AP2/ERF domain
PROSITE profilePS5103217.108279342IPR001471AP2/ERF domain
PRINTSPR003671.4E-6280291IPR001471AP2/ERF domain
CDDcd000181.12E-24377438No hitNo description
SuperFamilySSF541711.05E-17377438IPR016177DNA-binding domain
PROSITE profilePS5103219.137378436IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18378436IPR001471AP2/ERF domain
SMARTSM003802.1E-34378442IPR001471AP2/ERF domain
PfamPF008471.9E-9379428IPR001471AP2/ERF domain
PRINTSPR003671.4E-6418438IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIHEGYA TAGDDQDHGA SGFPSPMSAV MPLRSDGSLC VPTDPFRRHE  60
DWRYENSNMG MNIGTTTNVS NPSEEGPKLE DFLGCCYSNS PSDPDHHHHH DEAKVYCNQE  120
NPEISNTDIS KINVNLAPSF NPNGEMETRE NTNNNNNNPT NLSSVIQSYG HYSTENSHVG  180
LIPTSNGVYK SWLGQTLPYH HGDDDQKSAA DQSTGCSFQS LSLTMSPTSQ DGSRHHHHVG  240
AISTLQVSDS RKRSVNGKSS AKEPVPRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS  300
CRKEGQTRKG RQGGYDKEEK AAKAYDLAAL KYWGPTTHIN FPLSTYEKEL EEMKNMTRQE  360
FVANLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD  420
IAAIKFRGTS AVTNFDISRY DVKRICSSST LIAGDLAKRS PKDSAPTTAS TAALEDFNSC  480
AASSSTPQKP LLAITNGERS DELADMVWTA NADHDMNNPP HEINSDTNNR NSSNGGDQFG  540
GGGGGDFSQA YFMQGNAKFD QDSNGGNNHE HGRIGNLGLV QQQHVPMFAL WNE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296421e-149KP229642.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF19) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029013.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-130AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLW9RYB00.0W9RYB0_9ROSA; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_010107987.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-110AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]