PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107707.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 379aa    MW: 43275.2 Da    PI: 4.4529
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107707.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1185.7e-37341262103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+yei+ed+++++++sws+ +nsfvv+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_010107707.1  34 FLTKTYEIVEDPATNHVVSWSRGNNSFVVWDPQNFAMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKN 119
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  XP_010107707.1 120 IRRRKPS 126
                     ****976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-6230123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.35E-3630123IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-3930123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-193457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MKSQFVRVKE EFPGGAAAAP QPIEGLHDVG PPPFLTKTYE IVEDPATNHV VSWSRGNNSF  60
VVWDPQNFAM SLLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKNI  120
RRRKPSQPAQ SSSQQANLDP ACVEVGRFGL DGEVDRLRRD KQVLMVELVK LRQQQQNTRS  180
YLQAMEDRLK RTELKQQQVM NFLSRAMQNP NFVQQLVQQN DKRRELEEAI SKKRRRPIEQ  240
GPSVVDQVVV DDGDDDIGLG QSSGGAENIF VKMEPQDYNI DMGAEFDQEV DELDELTTID  300
MQGMSSGAIS QKNNTELEEE VHGSFSNRDI ELDEGFWINL LNESMEEEVG ILGVDDEEDE  360
EDHVDILAEQ LGFLASSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D4e-2711233129Heat shock factor protein 1
5d5v_B4e-2711233129Heat shock factor protein 1
5d5u_B4e-2711233129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221235KRRELEEAISKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107707.10.0Heat stress transcription factor A-6b
SwissprotQ9LUH81e-135HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLW9S5M80.0W9S5M8_9R
STRINGGLYMA20G28870.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-122heat shock transcription factor A6B