PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107183.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 354aa    MW: 39491.6 Da    PI: 9.2584
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107183.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-1147104156
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                     s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ ++ Aa a++ a++k++g+
  XP_010107183.1  47 SIYRGVTRHRWTGRYEAHLWDkNCWNDsQNKKGRQGAYDDEKAAAHAYDLAALKYWGH 104
                     57*******************99998888888888*****99*************997 PP

2AP251.33e-16146197155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_010107183.1 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 197
                     89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-847104IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1447112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-1248111IPR001471AP2/ERF domain
SMARTSM003808.0E-1948117IPR001471AP2/ERF domain
PROSITE profilePS5103218.24148111IPR001471AP2/ERF domain
PRINTSPR003674.0E-64960IPR001471AP2/ERF domain
CDDcd000185.91E-23146207No hitNo description
PfamPF008475.5E-12146197IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17146207IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-17147206IPR001471AP2/ERF domain
SMARTSM003801.2E-24147211IPR001471AP2/ERF domain
PROSITE profilePS5103218.334147205IPR001471AP2/ERF domain
PRINTSPR003674.0E-6187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAKVSQKNQK NSAATGKKNH GNDSNVAKKA KRTRKSVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNDSQNKKGR QGAYDDEKAA AHAYDLAALK YWGHDTILNF PLPTYEEELK  120
EMEGQSKEEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLRPTSNQN NPNNFQPNPN GDLINSTSPT  240
SPNPHLGLMR LSATGDPAAT TPRNGGGSGG ASPSSALGLL LQSTKFKEML ERTSAADAPP  300
EMEPPRRSFP EDIQTYFDCQ DSSSYTEGDD ILFGDLGNTF ASVPINFHCE ELDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296490.0KP229649.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF26) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028518.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-121AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLW9RW730.0W9RW73_9ROSA; AP2-like ethylene-responsive transcription factor
STRINGXP_010107183.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-109ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]