PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107036.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TCP
Protein Properties Length: 286aa    MW: 31624.2 Da    PI: 6.7816
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107036.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP66.59.5e-2111052298
             TCP  22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssasnsssg............. 88 
                     +Rls+++a++fFdLq+ LGf ++skt+eWLl++a  +ik+l ++               +s+++++ce             g             
  XP_010107036.1   1 MRLSIDVAREFFDLQELLGFERASKTVEWLLRKARSEIKKLKDSnneggcsstcpemqtPSPNSESCE-------------Gasgldevginged 82 
                     8*******************************************777766655555543333333332.............02222233333333 PP

             TCP  89 ................kaaksaaksk 98 
                                     +   s+++++
  XP_010107036.1  83 qgvagtssskplinqpA---SNKSEE 105
                     44444444444443221...111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-201112IPR005333Transcription factor, TCP
PROSITE profilePS5136922.627141IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MRLSIDVARE FFDLQELLGF ERASKTVEWL LRKARSEIKK LKDSNNEGGC SSTCPEMQTP  60
SPNSESCEGA SGLDEVGING EDQGVAGTSS SKPLINQPAS NKSEEKQQTG DQLPNQNMMD  120
IDMNNNIVIP NSSLGAVMQV SRYDQRYEFS QEILPISNPN GWNIFQVSNH DHIRQTSTTS  180
TGTTAPIVDY ETYSYLVNHL EKWNNSLVAN SVSNVGTTSG ATGFRVPQQV LLRLEILIAM  240
AYSPKKKEHT PLKTRVRYNK AISVHCPSHG AVRGCYRSYS SQPTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBA0000428e-59BA000042.1 Nicotiana tabacum mitochondrial DNA, complete genome.
GenBankFR7148688e-59FR714868.1 Malus x domestica mitchondrial complete genome, cultivar Golden delicious.
GenBankGU3635338e-59GU363533.1 Fragaria vesca subsp. americana isolate f29J24mt1653 fosmid 29J24 maturase-related protein-like gene, partial sequence; mitochondrial.
GenBankHG9754448e-59HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankKF7350638e-59KF735063.1 UNVERIFIED: Panax ginseng mitochondrion sequence.
GenBankKF8153908e-59KF815390.1 Helianthus annuus mitochondrion, complete genome.
GenBankKM2076828e-59KM207682.1 Nicotiana tabacum/Hyoscyamus niger cybrid clone contig5 mitochondrion, complete sequence.
GenBankKM2076858e-59KM207685.1 Hyoscyamus niger mitochondrion, complete genome.
GenBankKP9404858e-59KP940485.1 Bartsia sp. JPM2059 NADH dehydrogenase subunit 5 (nad5) gene, exon 3 and partial cds; NADH dehydrogenase subunit 4 (nad4) gene, complete cds; tRNA-Met (trnM) gene, complete sequence; NADH dehydrogenase subunit 6 (nad6), ATP synthase subunit 8 (atp8), and cytochrome c oxidase subunit 3 (cox3) genes, complete cds; sdh4 pseudogene, tRNA-Met (trnM), tRNA-Phe (trnF), tRNA-Met (trnM), and ribosomal RNA large subunit (rrnL) genes, complete sequence; maturase (matR) gene, complete cds; NADH dehydrogenase subunit 1 (nad1) gene, exon 4 and partial cds; and SecY-independent membrane transporter protein (mttB) gene, complete cds; mitochondrial.
GenBankKR0711218e-59KR071121.1 UNVERIFIED: Nicotiana tabacum strain ms zhongyan100 mitochondrion sequence.
GenBankKR5346068e-59KR534606.1 Malus hupehensis var. mengshanensis mitochondrion, complete genome.
GenBankKR7800368e-59KR780036.1 Nicotiana tabacum cultivar zhongyan 100 mitochondrion, complete genome.
GenBankKT9979648e-59KT997964.1 Nicotiana sylvestris cultivar TW 137 mitochondrion, complete genome.
GenBankKU1879678e-59KU187967.1 Ziziphus jujuba mitochondrion, complete genome.
GenBankOBEMTNAD138e-59M63034.1 Oenothera berteriana mitochondrial NADH:ubiquinone oxidoreductase (nad1) DNA, exon 4 and 5 and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024025859.11e-94transcription factor TCP10
TrEMBLW9RVV50.0W9RVV5_9ROSA; Uncharacterized protein
STRINGXP_010107036.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-15TCP family protein