PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105409.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 391aa    MW: 44144.7 Da    PI: 6.9067
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105409.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.9e-1251107155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  XP_010105409.1  51 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 107
                     57*******************99998898888888********************98 PP

2AP2513.5e-16150201155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_010105409.1 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 201
                     89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-851107IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1551117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-1352116IPR001471AP2/ERF domain
PROSITE profilePS5103218.82152115IPR001471AP2/ERF domain
SMARTSM003805.4E-2152121IPR001471AP2/ERF domain
PRINTSPR003675.2E-65364IPR001471AP2/ERF domain
CDDcd000182.00E-23150211No hitNo description
PfamPF008476.4E-12150201IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17150211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17151210IPR001471AP2/ERF domain
PROSITE profilePS5103218.281151209IPR001471AP2/ERF domain
SMARTSM003804.7E-24151215IPR001471AP2/ERF domain
PRINTSPR003675.2E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAKLSQLQNQ TMTKNNNRNN NGTNSSSTTG VQKVKRTRRS VPRDSPPQRS SIYRGVTRHR  60
WTGRYEAHLW DKNCWNESQN KKGRQGAYDD EEAAAHAYDL AALKYWGQDT ILNFPLSTYD  120
KELKEMEGVA REEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAT AYDMAAIEYR GLNAITNFDL SRYIKWLKPN STITTDHNHI SENLGLQNLN  240
TNTDTNSSQS LINQETDKLG LGNFFHSIQQ VASCNVDETL IAQQPRPSTA TSALGLLLQS  300
SKFKEMIEMT SAADHCLPPP SSPPPPPESE APQSSFPENV QTYFDDHKCQ DSSSFADGDD  360
GIFSELNSFM QPMFPCDFDV DAYLKEGKET Y
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027310.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-110AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLW9RR610.0W9RR61_9ROSA; AP2-like ethylene-responsive transcription factor
STRINGXP_010105409.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.17e-90ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]