PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105336.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 451aa    MW: 48910.7 Da    PI: 8.3245
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105336.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-1376132155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  XP_010105336.1  76 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 132
                     57*******************6666777775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1476141IPR016177DNA-binding domain
PfamPF008476.6E-976132IPR001471AP2/ERF domain
PROSITE profilePS5103218.51877140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-1277141IPR001471AP2/ERF domain
SMARTSM003802.4E-1777146IPR001471AP2/ERF domain
PRINTSPR003675.2E-57889IPR001471AP2/ERF domain
PRINTSPR003675.2E-5122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MASSSSDPGL KPESNGGGGG GGGGGGGGGG ESSEAAMAND QILLYRGLKK AKKERGCTAK  60
ERISKMPPCA AGKRSSIYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ GAYDDEEAAA  120
RAYDLAALKY WGPGTLINFP DVDDVVQVTD YTRDLEEMQN VSREEYLASL RRKSSGFSRG  180
ISKYRGLPSR WELSFGRMAG SEYFSGMHYG TGEDPATENE FMGSLCFERK MDLTNCIKWW  240
GPNKNRQGDA SVKSSEETKH GCAGDIGSEL KTLEWAVQPT EPYQMPRLGV SPEGKQHKGS  300
KVSALSILSR SAAYKSLQEK ASKKQESNVD NDENKNKNTI NQMDYGKAVE KSTSHDGGNE  360
RLGVGLGMTG GLSLQRNMFP LTPLLSAPLL TNYNTIDPLV DPILWTSLAP VLPSGISHPA  420
EVIAGEPPVA DVICQVMDHN LSGYGRRPAG G
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027236.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-162AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLW9RZ580.0W9RZ58_9ROSA; AP2-like ethylene-responsive transcription factor
STRINGXP_010105336.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-147AP2 family protein