PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103879.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 196aa    MW: 22425.1 Da    PI: 5.3308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103879.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.93.9e-4081271128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++kv+  +++  +vi+++d+y ++Pw+L+ k+ +e+++wyf+s++         +nr+t++gyWk  g +++v+ +
  XP_010103879.1   8 LPPGFRFYPTDEELVVHFLHRKVSLLPCHP-DVIPDLDLYPYDPWELDGKALGEDNKWYFYSRK--------TQNRVTNNGYWKPLGVEEAVIGR 93 
                     79*************************999.99**************977778999*****997........469****************9998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy g+ap+g kt+W+mhe++l
  XP_010103879.1  94 sGNKKVGTKKYLVFYVGEAPSGMKTNWIMHEFHL 127
                     68889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-506164IPR003441NAC domain
PROSITE profilePS5100547.7928165IPR003441NAC domain
PfamPF023653.5E-249127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDSNVNLPP GFRFYPTDEE LVVHFLHRKV SLLPCHPDVI PDLDLYPYDP WELDGKALGE  60
DNKWYFYSRK TQNRVTNNGY WKPLGVEEAV IGRSGNKKVG TKKYLVFYVG EAPSGMKTNW  120
IMHEFHLSDS ASTSSTTSSS TRSSKRRAPK KIDTSKWVLC RVYERDEDHD DGTELSCLDE  180
VFLSLDDLDE ISLPNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-41416613166NO APICAL MERISTEM PROTEIN
1ut4_B3e-41416613166NO APICAL MERISTEM PROTEIN
1ut7_A3e-41416613166NO APICAL MERISTEM PROTEIN
1ut7_B3e-41416613166NO APICAL MERISTEM PROTEIN
3swm_A4e-41416616169NAC domain-containing protein 19
3swm_B4e-41416616169NAC domain-containing protein 19
3swm_C4e-41416616169NAC domain-containing protein 19
3swm_D4e-41416616169NAC domain-containing protein 19
3swp_A4e-41416616169NAC domain-containing protein 19
3swp_B4e-41416616169NAC domain-containing protein 19
3swp_C4e-41416616169NAC domain-containing protein 19
3swp_D4e-41416616169NAC domain-containing protein 19
4dul_A3e-41416613166NAC domain-containing protein 19
4dul_B3e-41416613166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010103879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103879.11e-145NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK63e-83NC104_ARATH; NAC domain-containing protein 104
TrEMBLW9RXQ81e-143W9RXQ8_9ROSA; NAC domain-containing protein 68
STRINGXP_010103879.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-82xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]