PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v5.0

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010103788.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 306aa MW: 32916.4 Da PI: 8.1649

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010103788.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.3	7.9e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+ XP_010103788.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQA 98 6******************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_010103788.1 99 AVEAVLKGA 107 *998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.9E-97	1	305	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.03	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGAPIT PIASEAAAST 120 HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RCRFKRTGTT VVKPKARKAG CGSTGQDTAS 180 PKWAGYCADV AELNRSTSHE SSVSHQSEAV NVVDGESKET ESMISVETAE PAAASLLFRA 240 EPETVTTQVE ESIRENEMAL ELTLGLEPTA HARHVVPMKK RRIEASGCGS GRDGACKVEL 300 GLEYSA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010103788.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103788.1	0.0	LOB domain-containing protein 40
Swissprot	Q9M886	1e-106	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	W9RUX7	0.0	W9RUX7_9ROSA; Uncharacterized protein
STRING	XP_010103788.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-100	LOB domain-containing protein 41

Link Out ? help Back to Top
Entrez Gene	21391999