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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010103788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LBD | ||||||||
Protein Properties | Length: 306aa MW: 32916.4 Da PI: 8.1649 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.3 | 7.9e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+ XP_010103788.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_010103788.1 99 AVEAVLKGA 107 ***998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 2.9E-97 | 1 | 305 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 17.03 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGAPIT PIASEAAAST 120 HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RCRFKRTGTT VVKPKARKAG CGSTGQDTAS 180 PKWAGYCADV AELNRSTSHE SSVSHQSEAV NVVDGESKET ESMISVETAE PAAASLLFRA 240 EPETVTTQVE ESIRENEMAL ELTLGLEPTA HARHVVPMKK RRIEASGCGS GRDGACKVEL 300 GLEYSA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010103788.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103788.1 | 0.0 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 1e-106 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | W9RUX7 | 0.0 | W9RUX7_9ROSA; Uncharacterized protein | ||||
STRING | XP_010103788.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-100 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Entrez Gene | 21391999 |