PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103788.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LBD
Protein Properties Length: 306aa    MW: 32916.4 Da    PI: 8.1649
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103788.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.37.9e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+
  XP_010103788.1   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_010103788.1  99 AVEAVLKGA 107
                     ***998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.9E-971305IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.033109IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGAPIT PIASEAAAST  120
HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RCRFKRTGTT VVKPKARKAG CGSTGQDTAS  180
PKWAGYCADV AELNRSTSHE SSVSHQSEAV NVVDGESKET ESMISVETAE PAAASLLFRA  240
EPETVTTQVE ESIRENEMAL ELTLGLEPTA HARHVVPMKK RRIEASGCGS GRDGACKVEL  300
GLEYSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010103788.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103788.10.0LOB domain-containing protein 40
SwissprotQ9M8861e-106LBD41_ARATH; LOB domain-containing protein 41
TrEMBLW9RUX70.0W9RUX7_9ROSA; Uncharacterized protein
STRINGXP_010103788.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-100LOB domain-containing protein 41