PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103761.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LBD
Protein Properties Length: 248aa    MW: 26920.6 Da    PI: 8.0866
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103761.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.42.5e-294107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C++ p++     p++q++++ +++k++G++ +l+l++a pe  r+++++sl+yeA+ r+ +P+yG+vg++++++++ +q+
  XP_010103761.1   4 SCNGCRVLRKGCSDNCTIKPCLqwiksPDSQAHATLFLAKFYGRTGLLNLIDAGPEYLRPAVFKSLLYEACGRIVNPIYGSVGLLWSGEWEKCQV 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l++ 
  XP_010103761.1  99 AVEAVLAGM 107
                     ***998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6243109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRTSCNGCRV LRKGCSDNCT IKPCLQWIKS PDSQAHATLF LAKFYGRTGL LNLIDAGPEY  60
LRPAVFKSLL YEACGRIVNP IYGSVGLLWS GEWEKCQVAV EAVLAGMPIT GDGGGDGGAL  120
NPKLPLKSCD IRHVAKDSSA ESADQKLNQV VKTRNRFKRT SAKHRNLVVG SEFGVGGSNG  180
VADFTRFLNA GHEYYWWTCP AQGVNGTSCE DRESMFSVET VEASLARRAE PSRADDREVG  240
LELTLGLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010103761.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103761.10.0LOB domain-containing protein 42
SwissprotQ9CA304e-67LBD42_ARATH; LOB domain-containing protein 42
TrEMBLW9RM270.0W9RM27_9ROSA; Uncharacterized protein
STRINGXP_010103761.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-70LOB domain-containing protein 42