PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102588.1
Common NameDREB6A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 335aa    MW: 37101.1 Da    PI: 6.0962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102588.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79e-21155204255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  XP_010102588.1 155 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 204
                     59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-34154214No hitNo description
SuperFamilySSF541711.77E-23155213IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-32155213IPR001471AP2/ERF domain
SMARTSM003803.3E-39155218IPR001471AP2/ERF domain
PROSITE profilePS5103223.209155212IPR001471AP2/ERF domain
PRINTSPR003673.1E-11156167IPR001471AP2/ERF domain
PfamPF008472.2E-14156204IPR001471AP2/ERF domain
PRINTSPR003673.1E-11178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAAAIDIYSS SSQATQVFSD PFREELMKAL EPFMKSANTH NNNSPISSSS PPSSSTSSYY  60
PFSSSFSQPS FYHETCSPST TQVFSHMGFE QTGSLGLNQL TPSQILQIQA QIYFQQQQQN  120
NLAMMTTTSN NFNNYLGPRT VPMKNAGPTS KPNKLYRGVR QRHWGKWVAE IRLPKNRTRL  180
WLGTFDTAEE AALAYDKAAF KLRGDFARLN FPHLRHDGSH VSGDFGQYKP LHSSVDAKLQ  240
AICQSLQANA QKRETCPEPE TKPTVEPKVE SEASCSSPSS SSSPPPSLSD ESSAGSSSPE  300
SDIMLLDFFD SRWDECENFG ALGKYPSVEI DWDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22154212160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102588.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6783920.0KF678392.1 Morus notabilis dehydration responsive element binding transcription factor (DREB6A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102588.10.0ethylene-responsive transcription factor ERF060
SwissprotO656651e-84ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLW6FGA00.0W6FGA0_9ROSA; Dehydration responsive element binding transcription factor
STRINGXP_010102588.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-56ERF family protein