PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 730aa    MW: 80054 Da    PI: 6.7977
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101240.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.5e-11310366155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  XP_010101240.1 310 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 366
                     57*******************4444.2455535555.779999**************98 PP

2AP246.68.4e-15409460155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010101240.1 409 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 460
                     57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-8310366IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-14310376IPR016177DNA-binding domain
CDDcd000182.36E-19310376No hitNo description
Gene3DG3DSA:3.30.730.108.9E-12311375IPR001471AP2/ERF domain
PROSITE profilePS5103217.319311374IPR001471AP2/ERF domain
SMARTSM003801.1E-22311380IPR001471AP2/ERF domain
PRINTSPR003674.0E-6312323IPR001471AP2/ERF domain
PfamPF008471.0E-9409460IPR001471AP2/ERF domain
CDDcd000181.08E-24409470No hitNo description
SuperFamilySSF541711.18E-17409470IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-18410469IPR001471AP2/ERF domain
PROSITE profilePS5103219.045410468IPR001471AP2/ERF domain
SMARTSM003801.5E-33410474IPR001471AP2/ERF domain
PRINTSPR003674.0E-6450470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MNWLGFSLSP QELPASNPHH HHDQDHSAQS TVVSRLGFNS DEISGNDVSG ECFDLTSDST  60
APSLNHLPPP FGILEAFNRN NHHSQDWNMK GLGMNSDTNY KTSSSSDFSM LMGNTQNPEN  120
QHQHQQQQPK LENFLGRHSF HHHDHTGVSY SPNPAAAADY MFPTTCGSLH VPSEAVDRGA  180
NNNSNSNNNN SSSIGLSMIK TWLRNQPAPT TQQENKNDVG ATTGNGACGN SNTATTANGQ  240
SSLSLSMSTG SQSSSPLPLL AAASGGESSS SDNNKQQQQP RTTAAGIDSQ TGAIEAVPRK  300
SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQGGYDKE EKAARAYDLA  360
ALKYWGTTTT TNFPISNYEK ELEEMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH  420
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSILES  480
STLPIGGAAK RLKDVEKAEM TVDGQRITDD DNMSSQLTDA ISNYGHHNTW PTLAFQQPNF  540
VMHNYPYGQR VWCKQEQDTT SDQHSSFPHD LHHQLQLSNT HNFIQPNSVL HNLMGIDHSS  600
PTIEHSSGSN SVMYGDNNNG NNYGNGTNST GGYVIPMATV IASDQGNNGF GDSTTSTTTH  660
DVFGTSTDAY HRSLYYLPQQ SQVGVVKASA YDQGSACNNW VPTAVPTLAP RSNNMAVCHG  720
TPTFTVWNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101240.20.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-150BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLW9RF390.0W9RF39_9ROSA; AP2-like ethylene-responsive transcription factor BBM2
STRINGXP_010101240.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-124AP2 family protein