PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100832.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 445aa    MW: 49022.6 Da    PI: 6.9784
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100832.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17115164155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010100832.1 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164
                     78*******************......55************************998 PP

2AP242.71.4e-13207257155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +    +  k+++lg f+++ eAa+a+++a+ k +g
  XP_010100832.1 207 SKYRGVTLHK-CGRWEARMGQF----MGkKYVYLGLFDSEIEAARAYDKAAMKCNG 257
                     89********.7******5554....224**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-16115174IPR016177DNA-binding domain
PfamPF008472.0E-9115164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-17116172IPR001471AP2/ERF domain
CDDcd000187.23E-12116174No hitNo description
SMARTSM003801.1E-31116178IPR001471AP2/ERF domain
PROSITE profilePS5103217.622116172IPR001471AP2/ERF domain
CDDcd000181.38E-24207267No hitNo description
SuperFamilySSF541711.96E-16207265IPR016177DNA-binding domain
PfamPF008471.2E-9207257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15208265IPR001471AP2/ERF domain
PROSITE profilePS5103215.606208265IPR001471AP2/ERF domain
SMARTSM003808.5E-31208271IPR001471AP2/ERF domain
PRINTSPR003678.9E-6209220IPR001471AP2/ERF domain
PRINTSPR003678.9E-6247267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLDLNLSVAS SDTASDSAEK LLESSFSFDD DYYCSSSSDV DRVRTIDLFP ITGGGPSEKE  60
KNSSSSSRRE WLGLSTNATA SFCEGSFGGP TPAAVAAPQP AAMKKSRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGLEADIN FNISDYEEDI  180
KHMSNFSKEE FVHILRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFMGK KYVYLGLFDS  240
EIEAARAYDK AAMKCNGREA VTNFEPALYD VEMMSEAECE GGNQNLDLNL GIAPLSLSNG  300
PKENVETSGF YLEQVHMRER IENFSTARAK MPHGSRIASE HCSIIGGMNA SFFPNDMERA  360
TERGVDVDSL PNWAWQIQGR AAAPPVPAPL FCTAASSGFP SPSATSLPSS AANSQLHFPN  420
LPILHHHFPP SIANTTNLPH FYCRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100832.10.0floral homeotic protein APETALA 2
SwissprotB8AMA91e-106AP22_ORYSI; APETALA2-like protein 2
TrEMBLW9RE030.0W9RE03_9ROSA; Floral homeotic protein APETALA 2
STRINGXP_010100832.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-100related to AP2.7