PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100082.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 224aa    MW: 25042.9 Da    PI: 10.6003
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100082.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.93.4e-104884242
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeA 42
                    +++GVr ++ +gr++AeIrd ++    ++r +l +  tae+A
  XP_010100082.1 48 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLRTIHTAEGA 84
                    69*******.**********883....5************99 PP

2AP243.95.9e-14901251755
             AP2  17 AeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  XP_010100082.1  90 AEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARSLRG 125
                     9****883....5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.12E-2247132No hitNo description
PROSITE profilePS5103221.44348133IPR001471AP2/ERF domain
SMARTSM003803.1E-2948139IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-74886IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-134886IPR001471AP2/ERF domain
PfamPF008472.2E-948125IPR001471AP2/ERF domain
PRINTSPR003673.0E-104960IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1489133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-2189133IPR001471AP2/ERF domain
PRINTSPR003673.0E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAVDSLRLRK TSPLSMAASG EPQPEKPAVA ISKESSPSQL RGETKEAHFR GVRKRPWGRF  60
AAEIRDPWKK TRKWLRTIHT AEGAGRVVAA EIRDPWKKTR KWLGTFDTAE EAARAYDEAA  120
RSLRGPKAKT NFGHAPPIPI AIPIPPPHAL VVNGGEAFGD CVRFWRQPVY FDGGALPPPM  180
APVRSEYKGY KLENVDVVVS EHEKKMSKEK KPFLFDLNLP APLF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023747.11e-123ethylene-responsive transcription factor 8
TrEMBLW9RBQ91e-161W9RBQ9_9ROSA; Ethylene-responsive transcription factor 3
STRINGXP_010100082.11e-162(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-18ethylene responsive element binding factor 3