PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099404.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 315aa    MW: 34877.8 Da    PI: 8.3095
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099404.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.3e-19166220256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_010099404.1 166 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 220
                     788899***********************************************98 PP

2HD-ZIP_I/II1253.4e-40166255191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  XP_010099404.1 166 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELK-AL 255
                     69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.59E-18158223IPR009057Homeodomain-like
PROSITE profilePS5007117.524162222IPR001356Homeobox domain
SMARTSM003891.1E-15164226IPR001356Homeobox domain
PfamPF000463.6E-16166220IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-17166220IPR009057Homeodomain-like
CDDcd000866.24E-16166223No hitNo description
PROSITE patternPS000270197220IPR017970Homeobox, conserved site
PfamPF021834.6E-10222256IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.7E-25222265IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGFDHDHVCN TGLVLRLGFS PTTATATATA AKKPSTTTNS SSTPFEPSLL TLGLSGGGDE  60
AHDNNNNNNN SSSNNNNNRK IIDVSKSFHD HHLHQEPVQN NNNSNNNISV HDNSLYRQAS  120
PHSAVSSFSG GRVKRERDLS SEEIEVEEKV SLSRVSDEDE DGTNARKKLR LTKDQSALLE  180
ESFKQHSTLN PKQKQALARQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCETLTD  240
ENRRLHKELQ ELKALKLAQP LYMHMPAATL TMCPSCERIV GGVGGDVVGG SAKSPFSMAP  300
KPHFYNPFTN PSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214222RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099404.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-97HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLW9RI150.0W9RI15_9ROSA; Homeobox-leucine zipper protein HAT22
STRINGXP_010099404.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-81HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]