PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098958.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family G2-like
Protein Properties Length: 495aa    MW: 54261.9 Da    PI: 7.3816
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098958.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.6e-32276331156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_010098958.1 276 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 331
                     68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.78E-17273334IPR009057Homeodomain-like
PROSITE profilePS5129412.543273333IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-28274334IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-26276331IPR006447Myb domain, plants
PfamPF002498.9E-7278329IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSMLL KSFADHNQQP HDQTQKLEDF LSRLEEERLK IDAFKRELPL  60
CMQLLTNAVE SSRQQLQAYR SANNQGPIRP VLEEFIPLKT SSSEGSEKTT NTISDKANWM  120
TSAQLWSQTS EGLTKPQITT SSINNTSQKD QSDHISFNMS PKLALDNKQR NGGAFLPFSK  180
DQNSCPRAPL PELALSSAEK DVEDKKCFEG DQNGQRRESC GKFGNNNRVG VVIEQGKGSG  240
NISEGQTNNS STNNNNNNNN NGSNITTSNS NQTHRKARRC WSPDLHRRFV NALQMLGGSQ  300
VATPKQIREL MKVEGLTNDE VKSHLQKYRL HTRRPSPSPQ SAGAPAPQLV VLGGIWVPPE  360
YASAAAAAHG GAPAALYSPH PASHAPPHYC APPMPQDFYA SPAPASPPPM PHHHQLHHHA  420
LHHQLHMYKA TSQIHSSPES DVRGAGDRSE SIEDGKSESS SWKGESGENG GERKGLAALR  480
EDGEESNGSE ITLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-14276329154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-14276329154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-14276329154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-14276329154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098958.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098958.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-133EFM_ARATH; Myb family transcription factor EFM
TrEMBLW9R8R30.0W9R8R3_9ROSA; Two-component response regulator
STRINGXP_010098958.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-105G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]