PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TCP
Protein Properties Length: 393aa    MW: 44998.1 Da    PI: 4.4985
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097842.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.42.2e-37281612130
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 
                     ++kkdrhski+T++g+RdRRvRls+++a++fFdL d+LGfdk+skt+eWLl+++k+aikel ++                    s          
  XP_010097842.1  28 PTKKDRHSKIYTAQGLRDRRVRLSIDIAREFFDLHDMLGFDKASKTLEWLLTKSKKAIKELSRSklrthdhhghvmtkstallsS---------- 112
                     68**************************************************************776554444444333333321.......... PP

             TCP  77 sssssasnsssg...kaaksaakskksqksaasalnlakesrakarararertrekm 130
                           +++s +   ++ +++++ ++++k+++  +nl +e+ +++ ++++e+++e+ 
  XP_010097842.1 113 ------AANSDQcefNEVAAEHNVSPEDKDDH--NNLEEEEEEEEEEEEEEEEEEEE 161
                     ......11122233323333333333333333..33333222222222111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3829179IPR005333Transcription factor, TCP
PROSITE profilePS5136935.6813088IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.909217234IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MTSTTTTTTT KQDVIFTDPN NFGLPKKPTK KDRHSKIYTA QGLRDRRVRL SIDIAREFFD  60
LHDMLGFDKA SKTLEWLLTK SKKAIKELSR SKLRTHDHHG HVMTKSTALL SSAANSDQCE  120
FNEVAAEHNV SPEDKDDHNN LEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE  180
EEEEEDGVLL APKRKCLEEK IDMETLSESA LMSLLAKEAR AKARARARAR TKEKKHNYCT  240
SSYNSNKIRS NYNMGKCAGW SSQISNQLFR TVTSHLDQDQ TLRSPNLVGE ISQEKEAGLF  300
RMRSNARKDD DDDDQEEPSV VMIKRNKLKF PLISSGTYDH HQGQFCGISK GESSNSAMIY  360
SSPSLLLTQN WDNNNSNNIS TASPHSSSFC LPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-143588154Putative transcription factor PCF6
5zkt_B9e-143588154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219228RAKARARARA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9R5H50.0W9R5H5_9ROSA; Uncharacterized protein
STRINGXP_010097842.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-29TCP family protein