PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096346.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 412aa    MW: 46494.8 Da    PI: 8.1874
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096346.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.7e-1273129155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  XP_010096346.1  73 SRFRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 129
                     789******************88887786625555.********************98 PP

2AP250.64.7e-16172223155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_010096346.1 172 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 223
                     89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-1473139IPR016177DNA-binding domain
CDDcd000184.18E-1773139No hitNo description
PfamPF008472.5E-873129IPR001471AP2/ERF domain
SMARTSM003806.7E-1874143IPR001471AP2/ERF domain
PROSITE profilePS5103217.91274137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1174138IPR001471AP2/ERF domain
PRINTSPR003673.1E-57586IPR001471AP2/ERF domain
CDDcd000188.27E-24172233No hitNo description
SuperFamilySSF541711.44E-17172233IPR016177DNA-binding domain
PfamPF008471.3E-11172223IPR001471AP2/ERF domain
SMARTSM003802.5E-25173237IPR001471AP2/ERF domain
PROSITE profilePS5103218.676173231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18173232IPR001471AP2/ERF domain
PRINTSPR003673.1E-5213233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEMTLQSALC PTKRPVCMLE GENLTATAPK FTKRRRRDHS SAVKEQQAEV QQPRADQSAA  60
TTTAATATVK RSSRFRGVSR HRWTGRYEAH LWDKGSWNPT QRKKGKQGAY DEEESAARAY  120
DLAALKYWGT TTFTNFPVSD YEKEIEIMKT LTKEEYLASL RRRSSGFSRG VSKYRGVARH  180
HHNGRWEARI GRVFGNKYLY LGTYSTQEEA AHAYDIAAIE YRGINAVTNF DLSTYIRWLR  240
PVFNSLAAQE PKPAATTTIP PTTSPYLIPT NEKPDSSIFN LNPFTLEDLE TSKPQEIFQS  300
QTPISPFINS SSPTALDLLF KSSVFRELVE KNLCAESDEN EGNDMKNLLQ MKNSHFDMIS  360
YDGNGSIDCT SSANSYALPG LESQEESALT LCNERGQSLW NFPSNFSSVN FN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12834PKFTKRR
298106PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010096346.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296451e-155KP229645.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF22) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021353.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLW9R1M30.0W9R1M3_9ROSA; Ethylene-responsive transcription factor WRI1
STRINGXP_010096346.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-75AP2 family protein