PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096266.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 467aa    MW: 53782.3 Da    PI: 9.373
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096266.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.6e-16621431198
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + + r+++p +f++++  +   s+  t++ ++g +W+v l  +k ++++++ +GW++Fv+   +++g f++F+++g+s+f  +v +f+
  XP_010096266.1  62 FLRFRIRIPENFVKKFRDE--LSTVATINVPDGHVWRVGL--KKADNKIWFHDGWQDFVERYAIRAGYFLIFRYEGNSTF--HVYIFN 143
                     567899*******999755..888899999**********..**********************************9999..999986 PP

2B359.36.9e-19351441498
                     E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     vl ps+  + ++++lp  fae++ +g++     ++l++++gr+W v++ yr+++    l++GW eF  +n+L egD++vF++ +++e  l+v+vf
  XP_010096266.1 351 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQTSDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFEMLKTREIVLKVTVF 440
                     78899******************866743...5***************665555..66***********************98888888999998 PP

                     - CS
              B3  98 r 98 
                     r
  XP_010096266.1 441 R 441
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.35252145IPR003340B3 DNA binding domain
SMARTSM010191.6E-1358145IPR003340B3 DNA binding domain
PfamPF023622.6E-1362143IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-2063144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2063144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-1764143No hitNo description
Gene3DG3DSA:2.40.330.101.2E-23341441IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-23342441IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-21346441No hitNo description
PROSITE profilePS5086313.676348443IPR003340B3 DNA binding domain
SMARTSM010192.7E-18348443IPR003340B3 DNA binding domain
PfamPF023623.4E-17351441IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MPRPYFHKLV LSSTIHAKQL VPSLSFLLYY RILRTGVLPG FAEIWVGDKD DETEIYVFGV  60
VFLRFRIRIP ENFVKKFRDE LSTVATINVP DGHVWRVGLK KADNKIWFHD GWQDFVERYA  120
IRAGYFLIFR YEGNSTFHVY IFNLSTSEIN YQSNALCSPQ AIYGSRYQIF EEMEDDDLDA  180
ISSFPTQRMA SGPLKNKLFG ERAEQLTSGK VFNPPSLQNL FNGSKLNCVN WGNEGNLHPA  240
KGAGNYQAEN QLTRDIGVQF NVMERKKVAD EVKLHGSEEE FRKTKKVGRK KRKLDPNGQD  300
SSIKHEEDGD MRFRFYESAS ARKRTVTAEE RERAINTAKT FEPINPFCRV VLRPSYLYRG  360
CIMYLPSCFA EKNLSGVSGF IKLQTSDGRQ WPVRCLYRGG RAKLSQGWYE FTLENNLGEG  420
DVCVFEMLKT REIVLKVTVF RVLEDGGLIN QPPQHSHTVS HSKLIRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-7231444415144B3 domain-containing transcription factor VRN1
4i1k_B2e-7231444415144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281293RKTKKVGRKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010096266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021268.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLW9R1E80.0W9R1E8_9ROSA; B3 domain-containing transcription factor VRN1
STRINGXP_010096266.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-133B3 family protein