PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096038.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 518aa    MW: 55866.7 Da    PI: 5.1442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096038.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11334376754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  XP_010096038.1 334 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 376
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-16330396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9333376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-13334380No hitNo description
Gene3DG3DSA:4.10.280.102.0E-15334389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.03E-7447507No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MLPRSNGAVW MDGDEEEASS SWTKTNNNKE EEDMAAAMGG VVSSFSSFKS MLEGDWYSIS  60
NPLNNLHAGA GGFSGDHNNA GLLLQPIDSS ASCSPSQPFP LDQSHQPPPS FLPPKSCFSS  120
LLNFDNGGFD LSACESSGFF LGPPASSNSP VLMGFNNSEL SSSSEFGAST TRFLPLPPPP  180
PPLSSSDAAI GGFSPADFEG FDNGSANNTS LFLNRAKVLR PLEVFPPVGA QPTLFQKRAA  240
ALRQNSGGGD SVSLGNLEVS GLESGKRRKR SDYEGEIEEA SLDMSGLNYD SDEGNEYSKA  300
MEENAKSNSN ANSTVTGGVD QKGKKKGLPA KNLMAERRRR KKLNDRLYML RSVVPKISKM  360
DRASILGDAI DYLKELLQRI NDLHNELEST PPGSLLPPST SFHPLTPTPP TLPCRVKEEL  420
FPGSMPSPKN QPARVEVRLR EGRAVNIHMF CARRPGLLLS TMRALDNLGL DIQQAVISCF  480
NGFALDVFRA EQCREGQEVL PEQIKAVLLD SAGFHGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323341KKKGLPAKNLMAERRRRKK
2335342ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096038.10.0hypothetical protein L484_008694
SwissprotQ9LSE21e-154ICE1_ARATH; Transcription factor ICE1
TrEMBLW9R8S90.0W9R8S9_9R
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-127bHLH family protein