PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094226.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 383aa    MW: 41968.6 Da    PI: 8.1113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094226.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-1598149155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010094226.1  98 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 149
                     57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.5E-42969IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-73464IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-83465IPR016177DNA-binding domain
PROSITE profilePS510329.6513463IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1898159IPR016177DNA-binding domain
PfamPF008474.4E-1098149IPR001471AP2/ERF domain
CDDcd000181.16E-2598159No hitNo description
PROSITE profilePS5103219.04599157IPR001471AP2/ERF domain
SMARTSM003801.5E-3399163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1899158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDSSSSQNWL AFSLSNHPHL PLSLFEAFSS PSPGGYDKEE KAARAYDLAA LKYWGPTTTT  60
NFPVSNYEKE LEEMKNMTRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA  120
GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSIASSN LPIGGMSNTN  180
KSKNSSSDQS LSADSKTATV DDRDGLSSAS STLSFALPAA AAIKQDPSET YWSNIFAFQN  240
PSTSTVAKNP STPTATFFHT NPNSSLPLNM EFSAITTTTT SDHHNNGGFF AYSHHQQQQQ  300
QQHQNGTSAG SNTTNTAPFG MPISVHSNNN NSTTTYDQTS SSSGYNNSGN NWNNIGHAFH  360
HRQYQAHHAK PNTLFQTPIF GVE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296281e-161KP229628.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF05) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019917.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-102AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLW9QVY50.0W9QVY5_9ROSA; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_010094226.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.15e-91AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]