PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YC
Protein Properties Length: 258aa    MW: 28601.2 Da    PI: 6.6292
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094005.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.81e-55811841101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_010094005.1  81 QLRNFWTSQyqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 175
                     89*****99989*********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  XP_010094005.1 176 VDIVPREDL 184
                     ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.53E-3440175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.4E-3894167IPR009072Histone-fold
PfamPF008081.6E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDQQGHGQRA AMAVVGSGAQ PSYGVNPYQS SKLLGSSGPG SAGLLQGQNQ PAGPSASPQL  60
AQHQLAYQHM HQQQQEQLQQ QLRNFWTSQY QEIEQTSDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SVPRGSLPVG GPADGVPYYY MPPQHAQQVG PPGMIVGKPV MDQSVCGQQT  240
RPYIGQPSWP YQQQPPTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B6e-4188181297NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094005.10.0Nuclear transcription factor Y subunit C-9
SwissprotQ8L4B21e-87NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLW9QV280.0W9QV28_9R
STRINGVIT_05s0020g02790.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-82nuclear factor Y, subunit C9