PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093815.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 410aa    MW: 45652.2 Da    PI: 10.2757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093815.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003699120223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C  C+k+F +  +L  H+r+H
  XP_010093815.1  99 YCCVCNKTFFSLRSLSGHMRSH 120
                     5********************9 PP

2zf-C2H212.10.00059317339123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C ksFs+   L  H + H
  XP_010093815.1 317 YKCSSCEKSFSTFQALGGHRSIH 339
                     9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.00111942IPR007087Zinc finger, C2H2
SMARTSM003552.31941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5361946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SuperFamilySSF576675.34E-1096120No hitNo description
SMARTSM003550.09398120IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.14198120IPR007087Zinc finger, C2H2
PfamPF139122.6E-4100122IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576675.34E-10312339No hitNo description
PfamPF139129.5E-8317339IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.074317344IPR007087Zinc finger, C2H2
SMARTSM003550.17317339IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-5317341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDKFFIEGSN SSKPRGRTRT CPACGKVFSS GRAFGGHWRY HLQQDSRRGE KHSFFQRTGD  60
KFKAKARGGK RSFTAATTMN TTAMRNDDED QDRYDKTIYC CVCNKTFFSL RSLSGHMRSH  120
PERVWRGIQP PAAPPPNRMS SSSSEDARNQ DHWSEIEISP VDLLEHFPWS WSKTGKRGRK  180
SSAVAAAVDG LIDLSRGRES SRKFEKSIAD PSPLTSEDRI AKQLKIKSVS GKGTLLRISH  240
TYDHQEKEDT KDMKGKKVII IDSDVREKKG KNMCLGEKKR NFKSSSSTET DENVSLLGST  300
ASKTTKKIDN VTTTNWYKCS SCEKSFSTFQ ALGGHRSIHT KKIISTTPKM AEKEISTTNA  360
SDLITGSTTQ LADHSSPEIT MSSSGFGIRG GQSGRTLLDF DLNELPFGMA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019722.10.0uncharacterized protein LOC21405341
TrEMBLW9RGX40.0W9RGX4_9ROSA; Zinc finger protein ZAT2
STRINGXP_010093815.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-18C2H2 family protein