PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093384.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TCP
Protein Properties Length: 449aa    MW: 50087.7 Da    PI: 8.7518
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093384.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.42.9e-431272613135
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssg... 88 
                     gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aikel   +  s+  +      ++++++        +   
  XP_010093384.1 127 GKKDRHSKISTAQGLRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLITKSKTAIKELKAKQRCSS-TSegvvvsKTAEKE--------Dsgd 212
                     89***********************************************************9933333.22121222111111........1123 PP

             TCP  89 ..kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                       ++ +s    +k++k  +s+  +a+esr karararertrek+  k++
  XP_010093384.1 213 dhDHDESLIRMRKEKKIRKSHKVIARESRDKARARARERTREKNLEKSR 261
                     32334444477777777777889999*****************988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-39127256IPR005333Transcription factor, TCP
PROSITE profilePS5136936.641128186IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.753238255IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MFPLSGIYQH FPENTSENIY HDENPNSSNQ VQQYSRLAYS NLPTIFEDDG MLLSHLLSQE  60
QLIFAGNSTS HSSQAHTDEI SVVASNQAVL DHHHSPSTHE NPSKLGFTKK QRAKVQAIIS  120
IPRRRIGKKD RHSKISTAQG LRDRRMRLSL QIARKFFDLQ DMLGFDKASK TIEWLITKSK  180
TAIKELKAKQ RCSSTSEGVV VSKTAEKEDS GDDHDHDESL IRMRKEKKIR KSHKVIARES  240
RDKARARARE RTREKNLEKS RLSTTPTTSS SPEAANNNTT NTSVDLGKLR PNNSSLKMGA  300
SRFDQEFPGS DQMLDYSISN HIGGISSGAN SEDDFLGFPG NWDINIIDES SKTESFCGIT  360
VANTKPVVIG NVRTQNPCAI FTTTLSFDTE EKKPTSSFFP VIATSNAQRE NPSSIFVTSS  420
SYTHIVEENP SSVFMATSTI SHNYAAEEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093384.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093384.10.0transcription factor TCP12
TrEMBLW9QTT20.0W9QTT2_9ROSA; Uncharacterized protein
STRINGXP_010093384.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-31TCP domain protein 12