PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093172.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 312aa    MW: 35837.8 Da    PI: 8.8305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093172.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.61.3e-2879242128
             NAM  42 vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++P++     + ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s    +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_010093172.1   7 YKPEEVS---NVGDKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVkePHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 92 
                     5677775...45899*************************************97433445***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.5491129IPR003441NAC domain
PfamPF023651.1E-12592IPR003441NAC domain
SuperFamilySSF1019413.01E-3113128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MISGYLYKPE EVSNVGDKEW YFFCIRGRKY RNSIRPNRVT GSGFWKATGI DKPIYSVKEP  60
HDCIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPNGKTTT AANVFPNTKE NIGNYQEAEV  120
WTLCRIFKRI PSYKKYNIPK DNNNQNCKES TTPGKSSSSS KISCPVDDSS SKTCSFETDY  180
NDPHQVRLEL DHSDDHQNQN VQFLQRKDKR SSKPTVCSDH QQPDLDRTNR GSWFHKGHLC  240
NNNINFPLAA HQQYLHHHQG SIFPGSYPSF NMNPNAADHD FFTNGSWDEL RSVVQLAVDR  300
HPSQLYDVTD KS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-25213552171NO APICAL MERISTEM PROTEIN
1ut4_B2e-25213552171NO APICAL MERISTEM PROTEIN
1ut7_A2e-25213552171NO APICAL MERISTEM PROTEIN
1ut7_B2e-25213552171NO APICAL MERISTEM PROTEIN
4dul_A2e-25213552171NAC domain-containing protein 19
4dul_B2e-25213552171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093172.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093172.20.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-54NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLW9QSS60.0W9QSS6_9ROSA; NAC domain-containing protein 42
STRINGXP_010093172.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-56NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]