PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093055.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 370aa    MW: 42694.8 Da    PI: 7.3686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093055.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.62.9e-50331653128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     pGfrFhPtdeelv +yL++kv++k++++ + ik +diyk++PwdLpk  +++a++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s+
  XP_010093055.1  33 PGFRFHPTDEELVGFYLRRKVDKKPITI-QLIKPIDIYKYDPWDLPKgtSCSAGDKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPVHSH 126
                     9***************************.89***************545667799***************************************9 PP

             NAM  96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++ +glkktLv+y+g+a kg+ktdW+mhe+rl
  XP_010093055.1 127 ggdygqKNQCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 165
                     8888766666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-5230203IPR003441NAC domain
PROSITE profilePS5100552.05931203IPR003441NAC domain
PfamPF023653.2E-2633165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MIMDSPSNIG GGTILDEDHD HHGHDDQVEV PLPGFRFHPT DEELVGFYLR RKVDKKPITI  60
QLIKPIDIYK YDPWDLPKGT SCSAGDKEWY FFCKRGRKYK NSIRPNRVTG SGFWKATGID  120
KPVHSHGGDY GQKNQCIGLK KTLVYYRGSA GKGTKTDWMM HEFRLPTIND NYHNITNIHP  180
ACNTPKADPQ EAEIWTLCRI FKRNMSYRRY TPDWRELSTK RHHPMDAIIS SKKCSNLDHS  240
DNNNNITTNR EANHNYIDFS TPIRMNYHED HQEKKPVINH TMIMNNNGIS HHDRTSNQLL  300
HAGQLNSNMV PHNYNNHNII NVNPSINPFS SCFSTCPDEI SDDQLFTRMT NTTWDELSAV  360
VELALDPAFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-462720914171NO APICAL MERISTEM PROTEIN
1ut4_B3e-462720914171NO APICAL MERISTEM PROTEIN
1ut7_A3e-462720914171NO APICAL MERISTEM PROTEIN
1ut7_B3e-462720914171NO APICAL MERISTEM PROTEIN
4dul_A3e-462720914171NAC domain-containing protein 19
4dul_B3e-462720914171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093055.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093055.10.0transcription factor JUNGBRUNNEN 1 isoform X1
SwissprotQ9SK552e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLW9QSI20.0W9QSI2_9ROSA; NAC domain-containing protein 42
STRINGXP_010093055.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-79NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]