PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092844.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LBD
Protein Properties Length: 243aa    MW: 25276.5 Da    PI: 7.5301
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092844.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.6e-40251251100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l++el
  XP_010092844.1  25 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTVCYEAQARLRDPVYGCVAHIFALQQQVVSLQTEL 119
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_010092844.1 120 SYLQAH 125
                     *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.81924126IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3925123IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNTNQNPSSS SGGGGGGGGV GGGGPCGACK FLRRKCVPGC IFAPYFDSEQ GAAHFAAVHK  60
VFGASNVSKL LLHIPVHKRL DAVVTVCYEA QARLRDPVYG CVAHIFALQQ QVVSLQTELS  120
YLQAHLATLE LPSPPPAPPP PPSSLNPPPL SIADLPSASS VPATYDLSSL FEPIVQPWSM  180
QQRQLDPRQF GGSTGSSSTS GGGGDLQALA RELLHRHGSP PHGPVPCSDA SQSPSLSKRE  240
TDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092844.11e-176hypothetical protein L484_022439
SwissprotO813232e-84LBD30_ARATH; LOB domain-containing protein 30
TrEMBLW9QS271e-176W9QS27_9R
STRINGVIT_15s0048g00830.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-77LOB domain-containing protein 18