PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LBD
Protein Properties Length: 240aa    MW: 26296.1 Da    PI: 8.9714
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092842.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.43.2e-40211211100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf a+q +++fa+vhk+FGasn +kll ++p+++r da+ sl yeA ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_010092842.1  21 PCGACKFLRRKCVKGCIFAPYFDADQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVSLSYEALARIRDPVYGCVAHIFALQQQVVNLQAEL 115
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_010092842.1 116 AYVQAR 121
                     **9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.45220122IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3821119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MMNANNNGSS SYNTNTSTSG PCGACKFLRR KCVKGCIFAP YFDADQGTAH FAAVHKVFGA  60
SNASKLLLRI PPHKRLDAVV SLSYEALARI RDPVYGCVAH IFALQQQVVN LQAELAYVQA  120
RLSTLQRPPE ALIQPQSTSP TSMHSLTDVV ASTNSDIALT SNILMHLDPL QPQASSELAS  180
FSPFDLELHD GELQVLGRQF VSRYLPAALR LQRLLPVTMA FRARGHNGKA FLQTLTNYHD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092842.11e-179hypothetical protein L484_022437
SwissprotO813226e-67LBD31_ARATH; LOB domain-containing protein 31
TrEMBLW9QZX51e-179W9QZX5_9R
STRINGGLYMA03G02631.13e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.18e-66LOB domain-containing protein 31